RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 TRIM59Q8IWR1 403 aa15.77■□□□□ 0.12
SHMT2-210ENST00000553950 PGBD4Q96DM1 585 aa15.77■□□□□ 0.12
SHMT2-210ENST00000553950 FNBP1Q96RU3 617 aa15.77■□□□□ 0.12
SHMT2-210ENST00000553950 TUBGCP2Q9BSJ2 902 aa15.77■□□□□ 0.12
SHMT2-210ENST00000553950 IKZF4Q9H2S9 585 aa15.77■□□□□ 0.12
SHMT2-210ENST00000553950 AGO3Q9H9G7 860 aaKnown RBP15.77■□□□□ 0.12
SHMT2-210ENST00000553950 RPF1Q9H9Y2 349 aaKnown RBP15.77■□□□□ 0.12
SHMT2-210ENST00000553950 PLEKHA5Q9HAU0 1116 aa15.77■□□□□ 0.12
SHMT2-210ENST00000553950 CPSF3Q9UKF6 684 aaKnown RBP15.77■□□□□ 0.12
SHMT2-210ENST00000553950 TRIP11Q15643 1979 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 TDRD15B5MCY1 1934 aaKnown RBP15.76■□□□□ 0.11
SHMT2-210ENST00000553950 TTLL13PA6NNM8 815 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 FAM189A1O60320 539 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 GTF2H1P32780 548 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 CASP4P49662 377 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 VAMP7P51809 220 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 FANCCQ00597 558 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 CETN1Q12798 172 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 MBTPS1Q14703 1052 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 KRT31Q15323 416 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 DCAF17Q5H9S7 520 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-210ENST00000553950 COL13A1Q5TAT6 717 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-210ENST00000553950 TCERG1LQ5VWI1 586 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 CNKSR3Q6P9H4 555 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 IRF2BP1Q8IU81 584 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 CBWD2Q8IUF1 395 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 CREBRFQ8IUR6 639 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 RPUSD2Q8IZ73 545 aaKnown RBP15.76■□□□□ 0.11
SHMT2-210ENST00000553950 TNS4Q8IZW8 715 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 ZBTB45Q96K62 511 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-210ENST00000553950 MFSD14AQ96MC6 490 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 ACAP3Q96P50 834 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 WNT8AQ9H1J5 351 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 UBN1Q9NPG3 1134 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 FAM105AQ9NUU6 356 aa15.76■□□□□ 0.11
SHMT2-210ENST00000553950 GOLGA8IPA6NC78 632 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 LRRC10BA6NIK2 292 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 GOLGA8JA6NMD2 632 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 LGALS16A8MUM7 142 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 XPOTO43592 962 aaKnown RBP15.75■□□□□ 0.11
SHMT2-210ENST00000553950 NBNO60934 754 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 STAG3L1P0CL83 205 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 ATP1A3P13637 1013 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 CYP2C18P33260 490 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 ACOT2P49753 483 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 COPB1P53618 953 aaKnown RBP15.75■□□□□ 0.11
SHMT2-210ENST00000553950 UBASH3AP57075 661 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 PLCB2Q00722 1185 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 DSC3Q14574 896 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 HSP90AA4PQ58FG1 418 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 MFSD5Q6N075 450 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 THNSL1Q8IYQ7 743 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 EEF2KMTQ96G04 330 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 HAPLN2Q9GZV7 340 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 TSPYL2Q9H2G4 693 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-210ENST00000553950 ASB7Q9H672 318 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 USP20Q9Y2K6 914 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 DERAQ9Y315 318 aa15.75■□□□□ 0.11
SHMT2-210ENST00000553950 TET1Q8NFU7 2136 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 A0A0U1RQF3 1178 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 CCDC85CA6NKD9 419 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 PES1O00541 588 aaKnown RBP15.74■□□□□ 0.11
SHMT2-210ENST00000553950 P4HA2O15460 535 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 EVI5O60447 810 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 ZNF623O75123 536 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 AFPP02771 609 aaKnown RBP15.74■□□□□ 0.11
SHMT2-210ENST00000553950 ADRB2P07550 413 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 ACTN1P12814 892 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 CCL23P55773 120 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 MCCD1P59942 119 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-210ENST00000553950 PPIGQ13427 754 aaKnown RBP eCLIP15.74■□□□□ 0.113e-10■□□□□ 10.6
SHMT2-210ENST00000553950 VWA3BQ502W6 1294 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 UBXN11Q5T124 520 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 SLC24A5Q71RS6 500 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 WDR49Q8IV35 697 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 RDH13Q8NBN7 331 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 BORCS6Q96GS4 357 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 CGRRF1Q99675 332 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 ADAM2Q99965 735 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 EIF2AQ9BY44 585 aaKnown RBP15.74■□□□□ 0.11
SHMT2-210ENST00000553950 TRIM5Q9C035 493 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 NXF3Q9H4D5 531 aaKnown RBP15.74■□□□□ 0.11
SHMT2-210ENST00000553950 RGS18Q9NS28 235 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 TAB2Q9NYJ8 693 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 IPPQ9Y573 584 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 PCDHB2Q9Y5E7 798 aa15.74■□□□□ 0.11
SHMT2-210ENST00000553950 UMODL1Q5DID0 1318 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 A0A1B0GTH6 734 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 GTPBP10A4D1E9 387 aaKnown RBP15.73■□□□□ 0.11
SHMT2-210ENST00000553950 HOXA2O43364 376 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 BAIAP3O94812 1187 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 EOMESO95936 686 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 ITGA4P13612 1032 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 MXI1P50539 228 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 ENOX2Q16206 610 aaKnown RBP15.73■□□□□ 0.11
SHMT2-210ENST00000553950 CRELD2Q6UXH1 353 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-210ENST00000553950 CDR2LQ86X02 465 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-210ENST00000553950 PARD3BQ8TEW8 1205 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 SLC35C1Q96A29 364 aa15.73■□□□□ 0.11
SHMT2-210ENST00000553950 IQCDQ96DY2 449 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms