RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 RWDD2AQ9UIY3 292 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 GOLGA8IPA6NC78 632 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 GOLGA8JA6NMD2 632 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 RECQL4O94761 1208 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 LDHAP00338 332 aaKnown RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 CLTAP09496 248 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 FGFR1P11362 822 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 ATP2A2P16615 1042 aaKnown RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 NR2F2P24468 414 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 RPL13P26373 211 aaKnown RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 ERCC5P28715 1186 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 TNFSF9P41273 254 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 ACOT2P49753 483 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 STX17P56962 302 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 CT47A1Q5JQC4 288 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 TTI2Q6NXR4 508 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 FOXR2Q6PJQ5 311 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 CRELD2Q6UXH1 353 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 TMEM192Q8IY95 271 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 GPD1LQ8N335 351 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 XXYLT1Q8NBI6 393 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 FBXL18Q96ME1 805 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 FUCA2Q9BTY2 467 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 GZF1Q9H116 711 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 KIAA1586Q9HCI6 787 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 UBN1Q9NPG3 1134 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 RNF19AQ9NV58 838 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 PARP2Q9UGN5 583 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 CPSF3Q9UKF6 684 aaKnown RBP13.34□□□□□ -0.27
SHMT2-209ENST00000553949 GIT1Q9Y2X7 761 aa13.34□□□□□ -0.27
SHMT2-209ENST00000553949 HOXA2O43364 376 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 EXOC3O60645 756 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 DGKIO75912 1065 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 GJB5O95377 273 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 GATMP50440 423 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 YARSP54577 528 aaKnown RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 ADAM9Q13443 819 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 ENOX2Q16206 610 aaKnown RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 CLLU1OSQ5K130 101 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 FAM117BQ6P1L5 589 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 GLB1LQ6UWU2 654 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 C11orf57Q6ZUT1 292 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 CBWD2Q8IUF1 395 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 HERC6Q8IVU3 1022 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 TDHQ8IZJ6 230 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 ABI1Q8IZP0 508 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 NOC3LQ8WTT2 800 aaKnown RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 MED15Q96RN5 788 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 GAD1Q99259 594 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 DUSP9Q99956 384 aaKnown RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 DNAJC25Q9H1X3 360 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 RPF1Q9H9Y2 349 aaKnown RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 RSAD1Q9HA92 442 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 TOPORSQ9NS56 1045 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-209ENST00000553949 KLK14Q9P0G3 267 aa13.33□□□□□ -0.28
SHMT2-209ENST00000553949 CEP290O15078 2479 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 ARL5CA6NH57 179 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 ZNF233A6NK53 670 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 CETN3O15182 167 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 MEFVO15553 781 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 OFD1O75665 1012 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 CXCL8P10145 99 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 MLH1P40692 756 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 FKBP3Q00688 224 aaKnown RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 POU5F1Q01860 360 aaKnown RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 HSP90AA2PQ14568 343 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 SNRNP35Q16560 246 aaKnown RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 SLC10A6Q3KNW5 377 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 ANO6Q4KMQ2 910 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 CEP135Q66GS9 1140 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 LRRC55Q6ZSA7 311 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 ZC3H3Q8IXZ2 948 aaKnown RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 CSGALNACT2Q8N6G5 542 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 RDH13Q8NBN7 331 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 HELQQ8TDG4 1101 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 EEF2KMTQ96G04 330 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 SNX27Q96L92 541 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 ZFP42Q96MM3 310 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 CASD1Q96PB1 797 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 ZBED2Q9BTP6 218 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 TMEM117Q9H0C3 514 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 CXCL16Q9H2A7 254 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 PLEKHA5Q9HAU0 1116 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 RBAKQ9NYW8 714 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 RANBP2P49792 3224 aaKnown RBP13.32□□□□□ -0.28
SHMT2-209ENST00000553949 MICAL3Q7RTP6 2002 aa13.32□□□□□ -0.28
SHMT2-209ENST00000553949 PDE4DIPQ5VU43 2346 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 INPPL1O15357 1258 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 AKAP3O75969 853 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 ADRB2P07550 413 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 CASP4P49662 377 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 AFF1P51825 1210 aaKnown RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 HTRA4P83105 476 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 PPP2R3AQ06190 1150 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 XKR4Q5GH76 650 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 PRPF38BQ5VTL8 546 aaKnown RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 FAM109BQ6ICB4 259 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 ALKAL1Q6UXT8 129 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 BRSK2Q8IWQ3 736 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 GSTCDQ8NEC7 633 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms