RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 BRD1O95696 1058 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 OR1G1P47890 313 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 ZNF131P52739 623 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 NCKAP1LP55160 1127 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 DHX8Q14562 1220 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 PTPN14Q15678 1187 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 NAB2Q15742 525 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 SMAD2Q15796 467 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 SYCE2Q6PIF2 218 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 LINC00301Q8NCQ3 95 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 SMRP1Q8NCR6 262 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 MRPL4Q9BYD3 311 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 CDT1Q9H211 546 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 S1PR5Q9H228 398 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 KCNG1Q9UIX4 513 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 ODF2LQ9ULJ1 636 aa11.29□□□□□ -0.6
CCDC88C-206ENST00000553437 PLXNA4Q9HCM2 1894 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 C5orf42Q9H799 3197 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 SOD2P04179 222 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 GRM5P41594 1212 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 CLCN6P51797 869 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 SMTNP53814 917 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 ZP2Q05996 745 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 TUSC3Q13454 348 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 XKR4Q5GH76 650 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 ANKRD54Q6NXT1 300 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 LLGL2Q6P1M3 1020 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 ALKAL1Q6UXT8 129 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 CEP120Q8N960 986 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 KRI1Q8N9T8 703 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 SPDYE1Q8NFV5 336 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 SLC22A17Q8WUG5 538 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 SUSD6Q92537 303 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 LARP4BQ92615 738 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 KHSRPQ92945 711 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 ZBTB45Q96K62 511 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 FIZ1Q96SL8 496 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 PAAF1Q9BRP4 392 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 HERC2P3Q9BVR0 1158 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 LARSQ9P2J5 1176 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 CACNG4Q9UBN1 327 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 STK39Q9UEW8 545 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 PRKAG3Q9UGI9 489 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 FAM50BQ9Y247 325 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 GDAQ9Y2T3 454 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 HCFC2Q9Y5Z7 792 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 ATG2AQ2TAZ0 1938 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 CACNA1AO00555 2505 aa11.28□□□□□ -0.6
CCDC88C-206ENST00000553437 A0A087X0B3 334 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 MEFVO15553 781 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 THP07101 528 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 CNPP09543 421 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 ZSCAN22P10073 491 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 MCF2P10911 925 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 PDIA4P13667 645 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 PKP1Q13835 747 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 BMS1Q14692 1282 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 ZNF568Q3ZCX4 644 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 FOXD4L5Q5VV16 416 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 KIAA0319Q5VV43 1072 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 MPZL3Q6UWV2 235 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 ZPBP2Q6X784 338 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 HAUS6Q7Z4H7 955 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 ZBTB33Q86T24 672 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 ADHFE1Q8IWW8 467 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 GJD3Q8N144 294 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 RASSF8Q8NHQ8 419 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 FOXD4L4Q8WXT5 416 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 RABGGTAQ92696 567 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 CASP10Q92851 521 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 KLHL5Q96PQ7 755 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 PPP1R10Q96QC0 940 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 RPS6KC1Q96S38 1066 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 COLEC11Q9BWP8 271 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 GPR62Q9BZJ7 368 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 HAPLN2Q9GZV7 340 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 TSHZ2Q9NRE2 1034 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 CHST7Q9NS84 486 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 TFIP11Q9UBB9 837 aaKnown RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 STK17AQ9UEE5 414 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 CCDC39Q9UFE4 941 aa11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 USP15Q9Y4E8 981 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-206ENST00000553437 SMIM28A0A1B0GU29 152 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 CASTOR2A6NHX0 329 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 SPTLC2O15270 562 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 TRAK2O60296 914 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 PPP6R2O75170 966 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 NR1I2O75469 434 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 TOM1L1O75674 476 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 FAM13AO94988 1023 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 F13A1P00488 732 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 HSP90AA1P07900 732 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 EPCAMP16422 314 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 HOXB8P17481 243 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 IGFBP6P24592 240 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 CA8P35219 290 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 OSTNP61366 133 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 DSG1Q02413 1049 aa11.26□□□□□ -0.61
CCDC88C-206ENST00000553437 MCL1Q07820 350 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms