RNA–Protein interactions for RNA: ENST00000552890.5

TRAFD1-208, Transcript of TRAF-type zinc finger domain containing 1, humanhuman

TSL 2

Gene TRAFD1, Length 1,043 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAFD1-208ENST00000552890 R3HCC1Q9Y3T6 440 aaKnown RBP11.21□□□□□ -0.61
TRAFD1-208ENST00000552890 STYXL1Q9Y6J8 313 aa11.21□□□□□ -0.61
TRAFD1-208ENST00000552890 TCHHQ07283 1943 aa11.21□□□□□ -0.62
TRAFD1-208ENST00000552890 A0A087X0B3 334 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 A0A0B4J269 797 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 B4GALT5O43286 388 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 PRPF40AO75400 957 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 RHOBTB3O94955 611 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 C1RP00736 705 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 RPN1P04843 607 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 PRKCSHP14314 528 aaPredicted RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 ATF7P17544 494 aaPredicted RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 RPL13P26373 211 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 CACNB1Q02641 598 aaPredicted RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 PPP2R3AQ06190 1150 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 TUSC3Q13454 348 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 PAN2Q504Q3 1202 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 CLLU1OSQ5K130 101 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 AGMOQ6ZNB7 445 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 FMR1NBQ8N0W7 255 aaPredicted RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 COLGALT1Q8NBJ5 622 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 SMG8Q8ND04 991 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 ZNF507Q8TCN5 953 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 CACTINQ8WUQ7 758 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 TMEM174Q8WUU8 243 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 CDCA3Q99618 268 aaPredicted RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 CDX2Q99626 313 aaPredicted RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 STRA6Q9BX79 667 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 EIF2AQ9BY44 585 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 CDT1Q9H211 546 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 TBC1D13Q9NVG8 400 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 AGO2Q9UKV8 859 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 INPP5FQ9Y2H2 1132 aa11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 MRPL42Q9Y6G3 142 aaKnown RBP11.2□□□□□ -0.62
TRAFD1-208ENST00000552890 LAMA3Q16787 3333 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 RALGAPA2Q2PPJ7 1873 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 CALUO43852 315 aaPredicted RBP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 ZC3H11AO75152 810 aaKnown RBP eCLIP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 PPP1R37O75864 691 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 RECQL4O94761 1208 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 MYOGP15173 224 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 KCNE1P15382 129 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 CYP3A5P20815 502 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 NMT1P30419 496 aaKnown RBP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 MLH1P40692 756 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 BCAR1P56945 870 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 KNOP1Q1ED39 458 aaKnown RBP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 BMT2Q1RMZ1 405 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 AAK1Q2M2I8 961 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 ARMCX5Q6P1M9 558 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 SMARCE1Q969G3 411 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 GAD1Q99259 594 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 OXCT2Q9BYC2 517 aaPredicted RBP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 TTYH1Q9H313 450 aaPredicted RBP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 NXF3Q9H4D5 531 aaKnown RBP11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 GDPD2Q9HCC8 539 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 SNTG2Q9NY99 539 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 PLAGL2Q9UPG8 496 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 C2CD2Q9Y426 696 aa11.19□□□□□ -0.62
TRAFD1-208ENST00000552890 LCHNA4D1U4 455 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 ZNF233A6NK53 670 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 PDXKO00764 312 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 FGF18O76093 207 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 MBD3O95983 291 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 IGFBP4P22692 258 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 EHHADHQ08426 723 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 DSC1Q08554 894 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 CUL4BQ13620 913 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 GRIN2CQ14957 1233 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 XKR4Q5GH76 650 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 DCLRE1AQ6PJP8 1040 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 TAS1R3Q7RTX0 852 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 ZBTB33Q86T24 672 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 DDX53Q86TM3 631 aaKnown RBP11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 PPFIBP1Q86W92 1011 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 C12orf56Q8IXR9 622 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 TRIML1Q8N9V2 468 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 BEST2Q8NFU1 509 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 LRRC15Q8TF66 581 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 FIZ1Q96SL8 496 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 APOL6Q9BWW8 343 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 PRDM12Q9H4Q4 367 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 POLD4Q9HCU8 107 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 TLR9Q9NR96 1032 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 TSHZ2Q9NRE2 1034 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 CNTN3Q9P232 1028 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 UBQLN1Q9UMX0 589 aaKnown RBP11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 COG5Q9UP83 839 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 FAM50BQ9Y247 325 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 GDAQ9Y2T3 454 aa11.18□□□□□ -0.62
TRAFD1-208ENST00000552890 SF3B1O75533 1304 aaKnown RBP eCLIP11.17□□□□□ -0.621e-7■■■■■ 31.2
TRAFD1-208ENST00000552890 TMEM189-UBE2V1I3L0A0 370 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 EXTL3O43909 919 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 TADA2AO75478 443 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 GALTP07902 379 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 AKAP5P24588 427 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 OR1G1P47890 313 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 AP3M2P53677 418 aa11.17□□□□□ -0.62
TRAFD1-208ENST00000552890 ENPEPQ07075 957 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms