RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 FOXC1Q12948 553 aa16.18■□□□□ 0.18
VPS29-209ENST00000551655 PABPC1LQ4VXU2 614 aaKnown RBP16.18■□□□□ 0.18
VPS29-209ENST00000551655 PLA2G4FQ68DD2 849 aa16.18■□□□□ 0.18
VPS29-209ENST00000551655 PAAF1Q9BRP4 392 aa16.18■□□□□ 0.18
VPS29-209ENST00000551655 COLEC11Q9BWP8 271 aa16.18■□□□□ 0.18
VPS29-209ENST00000551655 NIFKQ9BYG3 293 aaKnown RBP16.18■□□□□ 0.18
VPS29-209ENST00000551655 BARHL2Q9NY43 387 aa16.18■□□□□ 0.18
VPS29-209ENST00000551655 ADAM28Q9UKQ2 775 aa16.18■□□□□ 0.18
VPS29-209ENST00000551655 CEBPBP17676 345 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 FCARP24071 287 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 CDC42EP1Q00587 391 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 FUT2Q10981 343 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 PPP2R5DQ14738 602 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 LRSAM1Q6UWE0 723 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 MAMSTRQ6ZN01 415 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 C12orf50Q8NA57 414 aaPredicted RBP16.17■□□□□ 0.18
VPS29-209ENST00000551655 FAM3CQ92520 227 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 BMP2KQ9NSY1 1161 aaPredicted RBP16.17■□□□□ 0.18
VPS29-209ENST00000551655 RBM12Q9NTZ6 932 aaKnown RBP16.17■□□□□ 0.18
VPS29-209ENST00000551655 LHX6Q9UPM6 363 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 MRPS23Q9Y3D9 190 aaKnown RBP16.17■□□□□ 0.18
VPS29-209ENST00000551655 LOC400499M0QZD8 3231 aa16.17■□□□□ 0.18
VPS29-209ENST00000551655 VWA8A3KMH1 1905 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 K7ESF4 209 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 MSH4O15457 936 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 XYLBO75191 536 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 MAFO75444 373 aaPredicted RBP16.16■□□□□ 0.18
VPS29-209ENST00000551655 SRGAP2CP0DJJ0 459 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 Q6ZS52 159 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 CEP68Q76N32 757 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 CEP57Q86XR8 500 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 SMC5Q8IY18 1101 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 GSTCDQ8NEC7 633 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 DNASE1L2Q92874 299 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 CPB2Q96IY4 423 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 TMEM87BQ96K49 555 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 BRD9Q9H8M2 597 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 COL4A3BPQ9Y5P4 624 aa16.16■□□□□ 0.18
VPS29-209ENST00000551655 DDX11L8A8MPP1 907 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 MAN2B1O00754 1011 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 EDIL3O43854 480 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 GAS7O60861 476 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 CHRNB1P11230 501 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 GSPT1P15170 499 aaKnown RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 HOXA9P31269 272 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 MCM5P33992 734 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 LIFRP42702 1097 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 PDCD11Q14690 1871 aaKnown RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 PSMD5Q16401 504 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 XKR3Q5GH77 459 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 AXDND1Q5T1B0 1012 aaPredicted RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 LONP2Q86WA8 852 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 TMTC2Q8N394 836 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 ZNF579Q8NAF0 562 aaKnown RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 EXOC6Q8TAG9 804 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 LNX1Q8TBB1 728 aaPredicted RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 TMEM143Q96AN5 459 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 LSM14BQ9BX40 385 aaKnown RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 NXF3Q9H4D5 531 aaKnown RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 KLK14Q9P0G3 267 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 WASF3Q9UPY6 502 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 RBM8AQ9Y5S9 174 aaKnown RBP16.15■□□□□ 0.18
VPS29-209ENST00000551655 PIAS3Q9Y6X2 628 aa16.15■□□□□ 0.18
VPS29-209ENST00000551655 NR1I2O75469 434 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 TADA2AO75478 443 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 RHOP08100 348 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 AKAP5P24588 427 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 NUCB1Q02818 461 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 CREMQ03060 361 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 WDR44Q5JSH3 913 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 ANO5Q75V66 913 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 GPR65Q8IYL9 337 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 ELSPBP1Q96BH3 223 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 UBN1Q9NPG3 1134 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 KCNH3Q9ULD8 1083 aa16.14■□□□□ 0.17
VPS29-209ENST00000551655 FOXD2O60548 495 aaPredicted RBP16.13■□□□□ 0.17
VPS29-209ENST00000551655 ZNF806P0C7X5 589 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 CCNE1P24864 410 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 SFNP31947 248 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 NOVA1P51513 510 aaKnown RBP16.13■□□□□ 0.17
VPS29-209ENST00000551655 JAK3P52333 1124 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 NPEPPSP55786 919 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 FAM171A1Q5VUB5 890 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 LRCH2Q5VUJ6 765 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 TCEAL6Q6IPX3 200 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 MIER3Q7Z3K6 550 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 PRPF31Q8WWY3 499 aaKnown RBP16.13■□□□□ 0.17
VPS29-209ENST00000551655 SLC5A5Q92911 643 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 TCEAL3Q969E4 200 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 TCEAL4Q96EI5 215 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 MTA3Q9BTC8 594 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 IER2Q9BTL4 223 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 TTPALQ9BTX7 342 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 TEKT3Q9BXF9 490 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 ADAM33Q9BZ11 813 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 NCANO14594 1321 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 SF3B1O75533 1304 aaKnown RBP eCLIP16.13■□□□□ 0.17
VPS29-209ENST00000551655 SPAG17Q6Q759 2223 aa16.13■□□□□ 0.17
VPS29-209ENST00000551655 TSPAN1O60635 241 aa16.12■□□□□ 0.17
VPS29-209ENST00000551655 KIF4AO95239 1232 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms