RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ZCCHC17Q9NP64 241 aaKnown RBP4.51□□□□□ -1.69
LIMA1-206ENST00000550611 IFT57Q9NWB7 429 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 PPT2Q9UMR5 302 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 MAP3K2Q9Y2U5 619 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 ZFHX4Q86UP3 3567 aa4.51□□□□□ -1.69
LIMA1-206ENST00000550611 DLG5Q8TDM6 1919 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 FAM205AQ6ZU69 1335 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 C5orf42Q9H799 3197 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CCL15-CCL14A0A0B4J2E2 113 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CLRN2A0PK11 232 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 ELL2O00472 640 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 TLR2O60603 784 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 TADA3O75528 432 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 DDX58O95786 925 aaKnown RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 RECKO95980 971 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 TCF3P15923 654 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CSF2RBP32927 897 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 IGHMBP2P38935 993 aaKnown RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 ATXN1P54253 815 aaKnown RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 PRMT2P55345 433 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 GCKRQ14397 625 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 KIF22Q14807 665 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 SHHQ15465 462 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CCL15Q16663 113 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 EMC4Q5J8M3 183 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 C9orf50Q5SZB4 431 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CCDC30Q5VVM6 783 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 DPY19L2P1Q6NXN4 242 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 POMZP3Q6PJE2 187 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 PCSK4Q6UW60 755 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 C17orf99Q6UX52 265 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CEP68Q76N32 757 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 SCUBE1Q8IWY4 988 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 TSPYL6Q8N831 410 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 C19orf47Q8N9M1 422 aaKnown RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 CACTINQ8WUQ7 758 aaKnown RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 ANKS1AQ92625 1134 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 TRMT2BQ96GJ1 504 aaKnown RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 LRRC37BQ96QE4 947 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 BACH2Q9BYV9 841 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 ZNF70Q9UC06 446 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-206ENST00000550611 SUGT1Q9Y2Z0 365 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 EMC9Q9Y3B6 208 aa4.5□□□□□ -1.69
LIMA1-206ENST00000550611 MYPNQ86TC9 1320 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 BTBD19C9JJ37 291 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 MYO1BO43795 1136 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 ADCY3O60266 1144 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TAF5LO75529 589 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 GNAI1P63096 354 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 UBXN2AP68543 259 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 MOGSQ13724 837 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 VGLL4Q14135 290 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TMEM31Q5JXX7 168 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 Q6ZSN1 163 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 G2E3Q7L622 706 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 UBE3BQ7Z3V4 1068 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TAX1BP1Q86VP1 789 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 C1orf210Q8IVY1 113 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 REXO1L1PQ8IX06 675 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 CRACR2BQ8N4Y2 399 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TDRD7Q8NHU6 1098 aaKnown RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 NPLOC4Q8TAT6 608 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 KLHL6Q8WZ60 621 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TMEM169Q96HH4 297 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 NAF1Q96HR8 494 aaKnown RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 MPHOSPH8Q99549 860 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 CHMP4AQ9BY43 222 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TDRD3Q9H7E2 651 aaKnown RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 VEZTQ9HBM0 779 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 TMEFF2Q9UIK5 374 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 AKT3Q9Y243 479 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 COA3Q9Y2R0 106 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 PCDHB4Q9Y5E5 795 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 ZNF646O15015 1829 aaPredicted RBP4.49□□□□□ -1.69
LIMA1-206ENST00000550611 PSME4Q14997 1843 aa4.49□□□□□ -1.69
LIMA1-206ENST00000550611 ADGRA2Q96PE1 1338 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ANKRD18BA2A2Z9 1011 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 APAF1O14727 1248 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 KNG1P01042 644 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ADH4P08319 380 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 C1SP09871 688 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 CETPP11597 493 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ACO1P21399 889 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 VAMP1P23763 118 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 MRPS5P82675 430 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 HDLBPQ00341 1268 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 NHLH1Q02575 133 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 TFF2Q03403 129 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 CALD1Q05682 793 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 NEXNQ0ZGT2 675 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 TNFAIP1Q13829 316 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 MRPL58Q14197 206 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 SMAD2Q15796 467 aaKnown RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 LRRC26Q2I0M4 334 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 STEAP3Q658P3 488 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 E4F1Q66K89 784 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-206ENST00000550611 MAMDC4Q6UXC1 1216 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 TMC5Q6UXY8 1006 aa4.48□□□□□ -1.69
LIMA1-206ENST00000550611 ZNF804AQ7Z570 1209 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms