RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CCHCR1Q8TD31 782 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 CFHR4Q92496 578 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 RABGGTAQ92696 567 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 SLC39A13Q96H72 371 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 CDK5RAP3Q96JB5 506 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 SAMD11Q96NU1 681 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 UHRF1Q96T88 793 aaPredicted RBP6.2□□□□□ -1.42
LIMA1-205ENST00000550592 GPHA2Q96T91 129 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 PTPN18Q99952 460 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 ENKD1Q9H0I2 346 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 CHST12Q9NRB3 414 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 STXBP5LQ9Y2K9 1186 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 NR2E1Q9Y466 385 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 FANCD2Q9BXW9 1451 aa6.2□□□□□ -1.42
LIMA1-205ENST00000550592 A0A088AWK7 358 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 NRP1O14786 923 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 B4GALT3O60512 393 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 B4GALT4O60513 344 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 SYN1P17600 705 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 RHBDL3P58872 404 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 NOGQ13253 232 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 KRT40Q6A162 431 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 CIAPIN1Q6FI81 312 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 PPP4R4Q6NUP7 873 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 NPNTQ6UXI9 565 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 RSPH3Q86UC2 560 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 ZGPATQ8N5A5 531 aaKnown RBP6.19□□□□□ -1.42
LIMA1-205ENST00000550592 FAM156AQ8NDB6 213 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 SVIPQ8NHG7 77 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 IFI44Q8TCB0 444 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 CASKIN2Q8WXE0 1202 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 RPL10LQ96L21 214 aaKnown RBP6.19□□□□□ -1.42
LIMA1-205ENST00000550592 B3GNT5Q9BYG0 378 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 LANCL2Q9NS86 450 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 NR2E3Q9Y5X4 410 aa6.19□□□□□ -1.42
LIMA1-205ENST00000550592 MYBBP1AQ9BQG0 1328 aaKnown RBP6.19□□□□□ -1.42
LIMA1-205ENST00000550592 ZNF608Q9ULD9 1512 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-205ENST00000550592 IFT140Q96RY7 1462 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 MATN2O00339 956 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 APAF1O14727 1248 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 ADCY6O43306 1168 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 ARIH2O95376 493 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 DDCP20711 480 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 KCNC1P48547 511 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 FAM193AP78312 1265 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 NKX6-1P78426 367 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-205ENST00000550592 TLE1Q04724 770 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 MTM1Q13496 603 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 ZNF568Q3ZCX4 644 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 KHDC1Q4VXA5 237 aaKnown RBP6.18□□□□□ -1.42
LIMA1-205ENST00000550592 PRAMEF14Q5SWL7 426 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 CCDC149Q6ZUS6 474 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 ZNF572Q7Z3I7 529 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-205ENST00000550592 C11orf96Q7Z7L8 435 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 ADGRE4PQ86SQ3 457 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 DAAM2Q86T65 1068 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 REPS2Q8NFH8 660 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 FAM167AQ96KS9 214 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 MSL2Q9HCI7 577 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 TMEM140Q9NV12 185 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 PUF60Q9UHX1 559 aaKnown RBP6.18□□□□□ -1.42
LIMA1-205ENST00000550592 ATRNL1Q5VV63 1379 aa6.18□□□□□ -1.42
LIMA1-205ENST00000550592 SMARCA4P51532 1647 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SYNJ2O15056 1496 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 CAPN8A6NHC0 703 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 LRRC14BA6NHZ5 514 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SLC26A4O43511 780 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 PEX14O75381 377 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 GPR32O75388 356 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 IL2RBP14784 551 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 MALP21145 153 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 PTPN7P35236 360 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 CASRP41180 1078 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 GJA9P57773 515 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 GPSM2P81274 684 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SP140Q13342 867 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SEMA5AQ13591 1074 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SAFB2Q14151 953 aaKnown RBP eCLIP6.17□□□□□ -1.42
LIMA1-205ENST00000550592 ZNF124Q15973 351 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 FAM47AQ5JRC9 791 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SYCP2LQ5T4T6 812 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 BORAQ6PGQ7 559 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 PDZD4Q76G19 769 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-205ENST00000550592 OR5M3Q8NGP4 307 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 PLBD2Q8NHP8 589 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 RAB24Q969Q5 203 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 TMX3Q96JJ7 454 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 CDC5LQ99459 802 aaKnown RBP6.17□□□□□ -1.42
LIMA1-205ENST00000550592 VRK1Q99986 396 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-205ENST00000550592 SENP6Q9GZR1 1112 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-205ENST00000550592 LDAHQ9H6V9 325 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 USP25Q9UHP3 1055 aa6.17□□□□□ -1.42
LIMA1-205ENST00000550592 AJAP1Q9UKB5 411 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-205ENST00000550592 WNT10BO00744 389 aa6.16□□□□□ -1.42
LIMA1-205ENST00000550592 SASH1O94885 1247 aa6.16□□□□□ -1.42
LIMA1-205ENST00000550592 CNOT4O95628 575 aaKnown RBP6.16□□□□□ -1.42
LIMA1-205ENST00000550592 NBPF7P0C2Y1 421 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-205ENST00000550592 ALOX15P16050 662 aaPredicted RBP6.16□□□□□ -1.42
LIMA1-205ENST00000550592 PCSK1P29120 753 aa6.16□□□□□ -1.42
LIMA1-205ENST00000550592 GZMKP49863 264 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms