RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SLC9A7Q96T83 725 aa23.11■■□□□ 1.29
VPS29-206ENST00000549578 TSG101Q99816 390 aa23.11■■□□□ 1.29
VPS29-206ENST00000549578 CCDC94Q9BW85 323 aaPredicted RBP23.11■■□□□ 1.29
VPS29-206ENST00000549578 PRO3102Q9H379 93 aa23.11■■□□□ 1.29
VPS29-206ENST00000549578 RNF19AQ9NV58 838 aa23.11■■□□□ 1.29
VPS29-206ENST00000549578 GATMP50440 423 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 TTI2Q6NXR4 508 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 CRELD2Q6UXH1 353 aaPredicted RBP23.1■■□□□ 1.29
VPS29-206ENST00000549578 C11orf57Q6ZUT1 292 aaPredicted RBP23.1■■□□□ 1.29
VPS29-206ENST00000549578 EEF2KMTQ96G04 330 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 FUCA2Q9BTY2 467 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 DMAC2Q9NW81 257 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 KLK14Q9P0G3 267 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 DACH1Q9UI36 760 aa23.1■■□□□ 1.29
VPS29-206ENST00000549578 CLTAP09496 248 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 NR2F2P24468 414 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 LRRC63Q05C16 580 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 EDRF1Q3B7T1 1238 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 CLLU1OSQ5K130 101 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 SLC9A9Q8IVB4 645 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 HERC6Q8IVU3 1022 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 GPD1LQ8N335 351 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 XXYLT1Q8NBI6 393 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 ACAP3Q96P50 834 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 MED15Q96RN5 788 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 DNAJC25Q9H1X3 360 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 CXCL16Q9H2A7 254 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 RSAD1Q9HA92 442 aa23.09■■□□□ 1.29
VPS29-206ENST00000549578 RNF216Q9NWF9 866 aaPredicted RBP23.09■■□□□ 1.29
VPS29-206ENST00000549578 CPSF3Q9UKF6 684 aaKnown RBP23.09■■□□□ 1.29
VPS29-206ENST00000549578 BICDL2A1A5D9 508 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 KIAA0391O15091 583 aaKnown RBP23.08■■□□□ 1.29
VPS29-206ENST00000549578 MEFVO15553 781 aaPredicted RBP23.08■■□□□ 1.29
VPS29-206ENST00000549578 EXTL3O43909 919 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 CCDC192P0DO97 292 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 CXCL8P10145 99 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 MLH1P40692 756 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 AFF1P51825 1210 aaKnown RBP23.08■■□□□ 1.29
VPS29-206ENST00000549578 NFIL3Q16649 462 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 FAM109BQ6ICB4 259 aaPredicted RBP23.08■■□□□ 1.29
VPS29-206ENST00000549578 CBWD2Q8IUF1 395 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 TDHQ8IZJ6 230 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 RDH13Q8NBN7 331 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 PHOSPHO2Q8TCD6 241 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 HELQQ8TDG4 1101 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 ZFP42Q96MM3 310 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 DUSP9Q99956 384 aaKnown RBP23.08■■□□□ 1.29
VPS29-206ENST00000549578 RWDD2AQ9UIY3 292 aa23.08■■□□□ 1.29
VPS29-206ENST00000549578 EXOC3O60645 756 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 GJB5O95377 273 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 LDHAP00338 332 aaKnown RBP23.08■■□□□ 1.28
VPS29-206ENST00000549578 CASP4P49662 377 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 YARSP54577 528 aaKnown RBP23.08■■□□□ 1.28
VPS29-206ENST00000549578 ENOX2Q16206 610 aaKnown RBP23.08■■□□□ 1.28
VPS29-206ENST00000549578 KYAT1Q16773 422 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 CEP135Q66GS9 1140 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 GAD1Q99259 594 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 INPP5FQ9Y2H2 1132 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 GIT1Q9Y2X7 761 aa23.08■■□□□ 1.28
VPS29-206ENST00000549578 GRXCR1A8MXD5 290 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 OFD1O75665 1012 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 DGKIO75912 1065 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 RPL13P26373 211 aaKnown RBP23.07■■□□□ 1.28
VPS29-206ENST00000549578 ADAM9Q13443 819 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 MYBPC2Q14324 1141 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 SLC10A6Q3KNW5 377 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 ANO6Q4KMQ2 910 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 GLB1LQ6UWU2 654 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 ABI1Q8IZP0 508 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 TMEM174Q8WUU8 243 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 SNX27Q96L92 541 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 FBXL18Q96ME1 805 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 ZBED2Q9BTP6 218 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 RPF1Q9H9Y2 349 aaKnown RBP23.07■■□□□ 1.28
VPS29-206ENST00000549578 UBN1Q9NPG3 1134 aa23.07■■□□□ 1.28
VPS29-206ENST00000549578 COL4A6Q14031 1691 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 CITO14578 2027 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 ARL5CA6NH57 179 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 TULP1O00294 542 aaPredicted RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 HOXA2O43364 376 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 ADRB2P07550 413 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 ERCC5P28715 1186 aaPredicted RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 FKBP3Q00688 224 aaKnown RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 SNRNP35Q16560 246 aaKnown RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 PAN2Q504Q3 1202 aaKnown RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 LRRC55Q6ZSA7 311 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 FAM212AQ96EL1 285 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 YME1L1Q96TA2 773 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 KIAA1586Q9HCI6 787 aa23.06■■□□□ 1.28
VPS29-206ENST00000549578 TOPORSQ9NS56 1045 aaPredicted RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 RBAKQ9NYW8 714 aaPredicted RBP23.06■■□□□ 1.28
VPS29-206ENST00000549578 LAMA3Q16787 3333 aa23.05■■□□□ 1.28
VPS29-206ENST00000549578 TBKBP1A7MCY6 615 aa23.05■■□□□ 1.28
VPS29-206ENST00000549578 AKAP3O75969 853 aa23.05■■□□□ 1.28
VPS29-206ENST00000549578 RABGGTBP53611 331 aa23.05■■□□□ 1.28
VPS29-206ENST00000549578 ZC3H3Q8IXZ2 948 aaKnown RBP23.05■■□□□ 1.28
VPS29-206ENST00000549578 CSGALNACT2Q8N6G5 542 aa23.05■■□□□ 1.28
VPS29-206ENST00000549578 CASD1Q96PB1 797 aa23.05■■□□□ 1.28
VPS29-206ENST00000549578 RC3H2Q9HBD1 1191 aaKnown RBP23.05■■□□□ 1.28
VPS29-206ENST00000549578 TRIP11Q15643 1979 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms