RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CNOT10Q9H9A5 744 aaKnown RBP17.34■□□□□ 0.37
CUX1-213ENST00000549414 OSGEPQ9NPF4 335 aa17.34■□□□□ 0.37
CUX1-213ENST00000549414 CALB1P05937 261 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 VCAM1P19320 739 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 ACTR2P61160 394 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 KRT17Q04695 432 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 CENPUQ71F23 418 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 ZNF720Q7Z2F6 126 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 DNAAF3Q8N9W5 541 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 RSRC1Q96IZ7 334 aaKnown RBP17.33■□□□□ 0.37
CUX1-213ENST00000549414 PPP1R12CQ9BZL4 782 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 C19orf81C9J6K1 198 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 MT-ND3P03897 115 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 CASP5P51878 434 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 TBX20Q9UMR3 447 aa17.33■□□□□ 0.37
CUX1-213ENST00000549414 NALCNQ8IZF0 1738 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 WEE2P0C1S8 567 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 TM4SF1P30408 202 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 TMEM62Q0P6H9 643 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 FAM102AQ5T9C2 384 aaPredicted RBP17.33■□□□□ 0.36
CUX1-213ENST00000549414 ENOSF1Q7L5Y1 443 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 RBBP8NLQ8NC74 664 aaPredicted RBP17.33■□□□□ 0.36
CUX1-213ENST00000549414 TOPORSQ9NS56 1045 aaPredicted RBP17.33■□□□□ 0.36
CUX1-213ENST00000549414 EPHB6O15197 1021 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 ZSCAN20P17040 1043 aaPredicted RBP17.33■□□□□ 0.36
CUX1-213ENST00000549414 E2F5Q15329 346 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 TMEM119Q4V9L6 283 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 KIAA1755Q5JYT7 1200 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 SIX6OS1Q8N1H7 587 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 TPCN2Q8NHX9 752 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 IDI2Q9BXS1 227 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 SMYD2Q9NRG4 433 aa17.33■□□□□ 0.36
CUX1-213ENST00000549414 VIRMAQ69YN4 1812 aaKnown RBP17.32■□□□□ 0.36
CUX1-213ENST00000549414 RASA4BC9J798 803 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 RASA4O43374 803 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 MYL3P08590 195 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 TWF2Q6IBS0 349 aaKnown RBP17.32■□□□□ 0.36
CUX1-213ENST00000549414 SYTL5Q8TDW5 730 aaPredicted RBP17.32■□□□□ 0.36
CUX1-213ENST00000549414 SYN2Q92777 582 aaPredicted RBP17.32■□□□□ 0.36
CUX1-213ENST00000549414 GLIS2Q9BZE0 524 aaPredicted RBP17.32■□□□□ 0.36
CUX1-213ENST00000549414 SLITRK3O94933 977 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 TMEM253P0C7T8 217 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 Q4G0T1 1027 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 NSMCE1Q8WV22 266 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 TNFRSF25Q93038 417 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 ZIM3Q96PE6 472 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 FAM208AQ9UK61 1670 aaKnown RBP17.32■□□□□ 0.36
CUX1-213ENST00000549414 LRRC10BA6NIK2 292 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 WNT10BO00744 389 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 SGPL1O95470 568 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 SESN3P58005 492 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 GABPAQ06546 454 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 KIAA1841Q6NSI8 718 aa17.32■□□□□ 0.36
CUX1-213ENST00000549414 LRRIQ3A6PVS8 624 aaPredicted RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 RNF225M0QZC1 329 aaPredicted RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 RGL2O15211 777 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 NPTX2P47972 431 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 PPP2R2AP63151 447 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 C2orf40Q9H1Z8 148 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 A0A087WUV0 522 aaPredicted RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 FAM187AA6NFU0 413 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 NOP14P78316 857 aaKnown RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 HIBCHQ6NVY1 386 aaPredicted RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 PDZD4Q76G19 769 aaPredicted RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 ZC3H18Q86VM9 953 aaKnown RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 SCYL3Q8IZE3 742 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 RBM46Q8TBY0 533 aaKnown RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 TMEM8AQ9HCN3 771 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 ZSCAN5CA6NGD5 496 aaPredicted RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 TISP43B9A030 160 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 SLC26A4O43511 780 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 EFCAB13Q8IY85 973 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 SLC20A1Q8WUM9 679 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 FAF2Q96CS3 445 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 KLHL29Q96CT2 875 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 KIF12Q96FN5 646 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 PDCD2LQ9BRP1 358 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 PPP1R9AQ9ULJ8 1098 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 INPP5FQ9Y2H2 1132 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 IZUMO3Q5VZ72 239 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 PAPD7Q5XG87 772 aaKnown RBP17.31■□□□□ 0.36
CUX1-213ENST00000549414 MMGT1Q8N4V1 131 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 C9orf72Q96LT7 481 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 ANKZF1Q9H8Y5 726 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 L1RE1Q9UN81 338 aa17.31■□□□□ 0.36
CUX1-213ENST00000549414 RCN2Q14257 317 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 OTOP1Q7RTM1 612 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 SLC16A10Q8TF71 515 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 MMTAG2Q9BU76 263 aaKnown RBP17.3■□□□□ 0.36
CUX1-213ENST00000549414 TIPINQ9BVW5 301 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 BRAFP15056 766 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 EFNA5P52803 228 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 BACE1P56817 501 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 TAF1CQ15572 869 aaPredicted RBP17.3■□□□□ 0.36
CUX1-213ENST00000549414 TAS1R2Q8TE23 839 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 DHX38Q92620 1227 aaKnown RBP17.3■□□□□ 0.36
CUX1-213ENST00000549414 SCYL1Q96KG9 808 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 EFCC1Q9HA90 598 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 ANKEF1Q9NU02 776 aa17.3■□□□□ 0.36
CUX1-213ENST00000549414 IP6K2Q9UHH9 426 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms