RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SUPT3HO75486 399 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 KRT1P04264 644 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 COILP38432 576 aaPredicted RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 PEX5P50542 639 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 ALDH18A1P54886 795 aaKnown RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 LMNB2Q03252 620 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 INTS2Q9H0H0 1204 aaKnown RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 KLHL11Q9NVR0 708 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 PDP2Q9P2J9 529 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 ANKFY1Q9P2R3 1169 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 PIK3C2AO00443 1686 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 O00370 1275 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 RIPK2O43353 540 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 KRT80Q6KB66 452 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 PPWD1Q96BP3 646 aaKnown RBP15.11■□□□□ 0.01
LIMS1-215ENST00000544547 OPTNQ96CV9 577 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 PCDHGC5Q9Y5F6 944 aa15.11■□□□□ 0.01
LIMS1-215ENST00000544547 KRT19P08727 400 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 ETS2P15036 469 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 SSTR3P32745 418 aaPredicted RBP15.1■□□□□ 0.01
LIMS1-215ENST00000544547 GRB10Q13322 594 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 CYTH1Q15438 398 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 TRIP10Q15642 601 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 CNGA2Q16280 664 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 TTC8Q8TAM2 541 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 PGM2Q96G03 612 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 LRGUKQ96M69 825 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 SERPINB12Q96P63 405 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 TRIM56Q9BRZ2 755 aaKnown RBP15.1■□□□□ 0.01
LIMS1-215ENST00000544547 PARVGQ9HBI0 331 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 SRRM3A6NNA2 597 aaPredicted RBP15.1■□□□□ 0.01
LIMS1-215ENST00000544547 FOXO6A8MYZ6 492 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 NTSR2O95665 410 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 NMT1P30419 496 aaKnown RBP15.1■□□□□ 0.01
LIMS1-215ENST00000544547 LACTB2Q53H82 288 aaPredicted RBP15.1■□□□□ 0.01
LIMS1-215ENST00000544547 IZUMO2Q6UXV1 221 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 PASD1Q8IV76 773 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 MAGEC3Q8TD91 643 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 AGPAT1Q99943 283 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 SHCBP1LQ9BZQ2 653 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 C1orf112Q9NSG2 853 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 PAIP2BQ9ULR5 123 aaKnown RBP15.1■□□□□ 0.01
LIMS1-215ENST00000544547 NWD1Q149M9 1564 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 ALAS1P13196 640 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 NR1H3Q13133 447 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 RNF34Q969K3 372 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 TSSK1BQ9BXA7 367 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 WNT8AQ9H1J5 351 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 THEGQ9P2T0 379 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 LRCH1Q9Y2L9 728 aa15.1■□□□□ 0.01
LIMS1-215ENST00000544547 TESPA1A2RU30 521 aaPredicted RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 PI4K2BG5E9Z4 385 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 COPEO14579 308 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 KLRC4O43908 158 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 LPXNO60711 386 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 GSTA2P09210 222 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ATP2B4P23634 1241 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 PTENP60484 403 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ITPK1Q13572 414 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 SMAD1Q15797 465 aaKnown RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 SLFN13Q68D06 897 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ZNF662Q6ZS27 426 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 FRMD5Q7Z6J6 570 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 TMEM165Q9HC07 324 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 MYBP10242 640 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 TPP2P29144 1249 aaPredicted RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 POLGP54098 1239 aaPredicted RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 CACNB3P54284 484 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 P3H1Q32P28 736 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ICA1LQ8NDH6 482 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ATP2A3Q93084 1043 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 CFAP36Q96G28 342 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 SERPINB13Q9UIV8 391 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ITIH2P19823 946 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 PON1P27169 355 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 GSTT1P30711 240 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ASPHQ12797 758 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ASPRV1Q53RT3 343 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 CRLF3Q8IUI8 442 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 PDIK1LQ8N165 341 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 SLC25A41Q8N5S1 370 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 FAXDC2Q96IV6 333 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 MAGEB18Q96M61 343 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 LZTS1Q9Y250 596 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 TACC3Q9Y6A5 838 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 HOXA13P31271 388 aaPredicted RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ATXN3P54252 364 aaPredicted RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 USP4Q13107 963 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 BLMHQ13867 455 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 CERKLQ49MI3 558 aaPredicted RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 TXNRD3Q86VQ6 643 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 BAP1Q92560 729 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 NSL1Q96IY1 281 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 TBC1D10AQ9BXI6 508 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 DHX36Q9H2U1 1008 aaKnown RBP15.09■□□□□ 0.01
LIMS1-215ENST00000544547 ADAM22Q9P0K1 906 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 AGAP1Q9UPQ3 857 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 SUGT1Q9Y2Z0 365 aa15.09■□□□□ 0.01
LIMS1-215ENST00000544547 CYP26A1O43174 497 aa15.08■□□□□ 0.01
LIMS1-215ENST00000544547 TMEM253P0C7T8 217 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms