RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 UPF3BQ9BZI7 483 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 NOP53Q9NZM5 478 aaKnown RBP9.45□□□□□ -0.9
VPS13D-212ENST00000543766 MTRRQ9UBK8 725 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 TRIM10Q9UDY6 481 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 STAP2Q9UGK3 403 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 STX8Q9UNK0 236 aa9.45□□□□□ -0.9
VPS13D-212ENST00000543766 C15orf38-AP3S2A0A0A6YYH1 394 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 PDLIM1O00151 329 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 SULT1B1O43704 296 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 LRRN2O75325 713 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 PPFIA1Q13136 1202 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 PLA2G4EQ3MJ16 856 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 RNF220Q5VTB9 566 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 TMEM154Q6P9G4 183 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 HSPH1Q92598 858 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 OSGEPL1Q9H4B0 414 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 DMAP1Q9NPF5 467 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 PARP2Q9UGN5 583 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 MTF2Q9Y483 593 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 CCDC61Q9Y6R9 512 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 UBXN8O00124 270 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 ZBTB39O15060 712 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 PEX1O43933 1283 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 BRINP1O60477 761 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 CRYZL1O95825 349 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 CYP2C9P11712 490 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 SERPINB3P29508 390 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 INSCQ1MX18 579 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 FUT11Q495W5 492 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 SIGIRRQ6IA17 410 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 NEPROQ6NW34 567 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 CALML6Q8TD86 181 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 TRIM43Q96BQ3 446 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 C7orf25Q9BPX7 421 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 SENP6Q9GZR1 1112 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 ANKZF1Q9H8Y5 726 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 BLOC1S4Q9NUP1 217 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 MOCS1Q9NZB8 636 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 ZMYND8Q9ULU4 1186 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 TNRQ92752 1358 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 A0A1B0GVL5 298 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 SMCO2A6NFE2 343 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 GOLGA8BA8MQT2 603 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 KCNQ3O43525 872 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 NR1I2O75469 434 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 ZBTB11O95625 1053 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 JAK1P23458 1154 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 GPR85P60893 370 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 EZH2Q15910 746 aaKnown RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 MAPKAPK3Q16644 382 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 SGO1Q5FBB7 561 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 Q6ZUG5 572 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 FAM71BQ8TC56 605 aa9.44□□□□□ -0.9
VPS13D-212ENST00000543766 NPHP4O75161 1426 aaPredicted RBP9.44□□□□□ -0.9
VPS13D-212ENST00000543766 EDC4Q6P2E9 1401 aaKnown RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CCDC160A6NGH7 325 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ZBTB14O43829 449 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SSX5O60225 188 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 GSTT1P30711 240 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 NKX2-5P52952 324 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 RFTN1Q14699 578 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 GEN1Q17RS7 908 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CRTC2Q53ET0 693 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SNX30Q5VWJ9 437 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 PHLDB3Q6NSJ2 640 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 KLC3Q6P597 504 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ANKMY2Q8IV38 441 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CCT6BQ92526 530 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SEC62Q99442 399 aaKnown RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 LPIN3Q9BQK8 851 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SDHAF3Q9NRP4 125 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CPSF3Q9UKF6 684 aaKnown RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SPATA2Q9UM82 520 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 DOLKQ9UPQ8 538 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 FADS3Q9Y5Q0 445 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SNX14Q9Y5W7 946 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 SYCE1LA8MT33 242 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ARHGEF15O94989 841 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CHEK2O96017 543 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 GALK1P51570 392 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 UGP2Q16851 508 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ARL13BQ3SXY8 428 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ZNF852Q6ZMS4 543 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ZNF704Q6ZNC4 412 aaPredicted RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ENOSF1Q7L5Y1 443 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 KRT74Q7RTS7 529 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 PALM2Q8IXS6 379 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 TSPYL6Q8N831 410 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 RNF169Q8NCN4 708 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 IFT81Q8WYA0 676 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 POMGNT1Q8WZA1 660 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 MTFMTQ96DP5 389 aaKnown RBP9.43□□□□□ -0.9
VPS13D-212ENST00000543766 PHF12Q96QT6 1004 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 RMND1Q9NWS8 449 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 FOXO6A8MYZ6 492 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 GLI1P08151 1106 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 GJB2P29033 226 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 TRIM23P36406 574 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 CCNFP41002 786 aa9.43□□□□□ -0.9
VPS13D-212ENST00000543766 ACADSBP45954 432 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 253.7 ms