RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TMEM161A	Q9NX61	479 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	KLK14	Q9P0G3	267 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	INPP5F	Q9Y2H2	1132 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	FRMD4B	Q9Y2L6	1034 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	EVPL	Q92817	2033 aa		11.07	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZNF233	A6NK53	670 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	HOXA2	O43364	376 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	FGFR1OP	O95684	399 aa	Known RBP	11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	FGFR1	P11362	822 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	ATP2A2	P16615	1042 aa	Known RBP	11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	TNFSF9	P41273	254 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	DEFB103A	P81534	67 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	MYBPC2	Q14324	1141 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	EDRF1	Q3B7T1	1238 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZBTB41	Q5SVQ8	909 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	GLB1L	Q6UWU2	654 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	CHRDL2	Q6WN34	429 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	C11orf57	Q6ZUT1	292 aa	Predicted RBP	11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	TMCO2	Q7Z6W1	182 aa	Predicted RBP	11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	C12orf56	Q8IXR9	622 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZSWIM2	Q8NEG5	633 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	RPS6KC1	Q96S38	1066 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	SRRT	Q9BXP5	876 aa	Known RBP	11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	TSPY26P	Q9H489	355 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	ELAC1	Q9H777	363 aa	Known RBP	11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	RSAD1	Q9HA92	442 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	UBN1	Q9NPG3	1134 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	GIT1	Q9Y2X7	761 aa		11.06	□□□□□ -0.64
CPSF7-221	ENST00000543545	WDR81	Q562E7	1941 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	TBKBP1	A7MCY6	615 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	BECN2	A8MW95	431 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	RECQL4	O94761	1208 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	CXCL8	P10145	99 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	EPB41	P11171	864 aa	Known RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	PSMC2	P35998	433 aa	Known RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZNF165	P49910	485 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	PPP2R3A	Q06190	1150 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	SNRNP35	Q16560	246 aa	Known RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	CCDC40	Q4G0X9	1142 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZCWPW2	Q504Y3	356 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	TTI2	Q6NXR4	508 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	ZNF598	Q86UK7	904 aa	Known RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	CBWD2	Q8IUF1	395 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	SLC9A9	Q8IVB4	645 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	TMEM192	Q8IY95	271 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	PHOSPHO2	Q8TCD6	241 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	URGCP	Q8TCY9	931 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	HELQ	Q8TDG4	1101 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	TOP1MT	Q969P6	601 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	CCDC127	Q96BQ5	260 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	FNBP1	Q96RU3	617 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	YME1L1	Q96TA2	773 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	GAD1	Q99259	594 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	DUSP9	Q99956	384 aa	Known RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	RNF19A	Q9NV58	838 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	DMAC2	Q9NW81	257 aa		11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	RBAK	Q9NYW8	714 aa	Predicted RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	CPSF3	Q9UKF6	684 aa	Known RBP	11.05	□□□□□ -0.64
CPSF7-221	ENST00000543545	LOXHD1	Q8IVV2	1947 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	ARL5C	A6NH57	179 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	MEIS3P2	A8K0S8	358 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	SMTNL1	A8MU46	457 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	LACTBL1	A8MY62	500 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	KRT13	P13646	458 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	ATF7	P17544	494 aa	Predicted RBP	11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	MLH1	P40692	756 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	CASP4	P49662	377 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	GATM	P50440	423 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	RNASEL	Q05823	741 aa	Known RBP	11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	SPAG1	Q07617	926 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	SURF1	Q15526	300 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	ENOX2	Q16206	610 aa	Known RBP	11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	NFIL3	Q16649	462 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	PAN2	Q504Q3	1202 aa	Known RBP	11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	SPATA1	Q5VX52	437 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	LRSAM1	Q6UWE0	723 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	AGMO	Q6ZNB7	445 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	FILIP1	Q7Z7B0	1213 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	HERC6	Q8IVU3	1022 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	FAM186B	Q8IYM0	893 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	ENOX1	Q8TC92	643 aa	Known RBP	11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	CEP63	Q96MT8	703 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	SLC9A7	Q96T83	725 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	FUCA2	Q9BTY2	467 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	TMEM117	Q9H0C3	514 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	MAGEC2	Q9UBF1	373 aa	Predicted RBP	11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	ARID2	Q68CP9	1835 aa		11.04	□□□□□ -0.64
CPSF7-221	ENST00000543545	TLL1	O43897	1013 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	OFD1	O75665	1012 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	AKAP3	O75969	853 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	IL18RAP	O95256	599 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	CAVIN2	O95810	425 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	GNA14	O95837	355 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	POMC	P01189	267 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	DLAT	P10515	647 aa	Known RBP	11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	BMP8B	P34820	402 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	SCNN1G	P51170	649 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	TPM4	P67936	248 aa		11.03	□□□□□ -0.64
CPSF7-221	ENST00000543545	MYL5	Q02045	173 aa		11.03	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms