RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 STK3Q13188 491 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 ZC3H14Q6PJT7 736 aaKnown RBP19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 PARM1Q6UWI2 310 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 DGLUCYQ7Z3D6 616 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 SUMF1Q8NBK3 374 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 OXER1Q8TDS5 423 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 GJB4Q9NTQ9 266 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 KLK14Q9P0G3 267 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 FBXW11Q9UKB1 542 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 ZMYM2Q9UBW7 1377 aa19.81■□□□□ 0.76
CLSTN3-214ENST00000542663 FSHRP23945 695 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 ARL2P36404 184 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 GPC5P78333 572 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 NTHL1P78549 312 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 TFDP1Q14186 410 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 EARS2Q5JPH6 523 aaKnown RBP19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 GRASPQ7Z6J2 395 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 TPH2Q8IWU9 490 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 NFKBIZQ9BYH8 718 aa19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 TRIM6Q9C030 488 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 ZFP37Q9Y6Q3 630 aaPredicted RBP19.8■□□□□ 0.76
CLSTN3-214ENST00000542663 NPTXRO95502 500 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 GLRA2P23416 452 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 CREMQ03060 361 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 NCBP1Q09161 790 aaKnown RBP19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 SLC27A1Q6PCB7 646 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 PIK3AP1Q6ZUJ8 805 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 RUBCNQ92622 972 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 CLSTN3Q9BQT9 956 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 DDX23Q9BUQ8 820 aaKnown RBP19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 CDH7Q9ULB5 785 aa19.79■□□□□ 0.76
CLSTN3-214ENST00000542663 A0A1B0GUA9 196 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 FAM205CA6NFA0 338 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 DTNBO60941 627 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 SNW1Q13573 536 aaKnown RBP19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 HSP90AA2PQ14568 343 aaPredicted RBP19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 PUM1Q14671 1186 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 HACE1Q8IYU2 909 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 HASPINQ8TF76 798 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 HINFPQ9BQA5 517 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 DLL3Q9NYJ7 618 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 CYP46A1Q9Y6A2 500 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 COL4A2P08572 1712 aa19.78■□□□□ 0.76
CLSTN3-214ENST00000542663 SF3B1O75533 1304 aaKnown RBP eCLIP19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 KANSL1LA0AUZ9 987 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 TADA2AO75478 443 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 LYPLA2O95372 231 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 LNX1Q8TBB1 728 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 FGF13Q92913 245 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 SHDQ96IW2 340 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 HSD17B14Q9BPX1 270 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 EIF2AK1Q9BQI3 630 aaKnown RBP19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 CXCL16Q9H2A7 254 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 PARP2Q9UGN5 583 aa19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 MTF2Q9Y483 593 aaPredicted RBP19.77■□□□□ 0.76
CLSTN3-214ENST00000542663 PDCD11Q14690 1871 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 ADAM12O43184 909 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 MARCH6O60337 910 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 DGAT1O75907 488 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 REC8O95072 547 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 KIF4AO95239 1232 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 HNRNPA1P09651 372 aaKnown RBP eCLIP19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 TUSC3Q13454 348 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 NAB2Q15742 525 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 CPLX2Q6PUV4 134 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 SLFN12Q8IYM2 578 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 PIK3R5Q8WYR1 880 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 NAP1L4Q99733 375 aaKnown RBP19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 TTPALQ9BTX7 342 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 ANKEF1Q9NU02 776 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 TICRRQ7Z2Z1 1910 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 GPR179Q6PRD1 2367 aa19.76■□□□□ 0.75
CLSTN3-214ENST00000542663 CASTOR2A6NHX0 329 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 TTLL13PA6NNM8 815 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 PTGESO14684 152 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 CCL16O15467 120 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 C8AP07357 584 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 RARRES1P49788 294 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 SCRN1Q12765 414 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 MLF2Q15773 248 aaPredicted RBP19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 PSMD5Q16401 504 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 ZNF528Q3MIS6 628 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 PPM1LQ5SGD2 360 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 FAM171A1Q5VUB5 890 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 ITFG1Q8TB96 612 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 POLR3FQ9H1D9 316 aaPredicted RBP19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 NCOR2Q9Y618 2525 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 STK36Q9NRP7 1315 aa19.75■□□□□ 0.75
CLSTN3-214ENST00000542663 A0A087WWV3 80 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 KINO60870 393 aaKnown RBP19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 BAG4O95429 457 aaKnown RBP19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 HOXA9P31269 272 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 SLC44A4Q53GD3 710 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 LIN9Q5TKA1 542 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 MTSS1LQ765P7 747 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 CEP57Q86XR8 500 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 KXD1Q9BQD3 176 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 TM6SF1Q9BZW5 370 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 HCFC1R1Q9NWW0 138 aa19.74■□□□□ 0.75
CLSTN3-214ENST00000542663 FBXO4Q9UKT5 387 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms