RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NSUN7Q8NE18 718 aaKnown RBP17.16■□□□□ 0.34
CLSTN3-213ENST00000541953 GPR152Q8TDT2 470 aa17.16■□□□□ 0.34
CLSTN3-213ENST00000541953 NKD2Q969F2 451 aaPredicted RBP17.16■□□□□ 0.34
CLSTN3-213ENST00000541953 NFKBIZQ9BYH8 718 aa17.16■□□□□ 0.34
CLSTN3-213ENST00000541953 RHOBTB2Q9BYZ6 727 aa17.16■□□□□ 0.34
CLSTN3-213ENST00000541953 TRIM6Q9C030 488 aaPredicted RBP17.16■□□□□ 0.34
CLSTN3-213ENST00000541953 LRRIQ4A6NIV6 560 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 MED24O75448 989 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 BAG4O95429 457 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 XBP1P17861 261 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 GRIK3Q13003 919 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 HTR4Q13639 388 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 PCBP1Q15365 356 aaKnown RBP eCLIP17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 NAB2Q15742 525 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 USP41Q3LFD5 358 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 DIS3L2Q8IYB7 885 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 GTF3C6Q969F1 213 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 NAP1L4Q99733 375 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 COLEC11Q9BWP8 271 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 PDZD7Q9H5P4 517 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 TBC1D17Q9HA65 648 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 POLD4Q9HCU8 107 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 PARP2Q9UGN5 583 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 SSX2IPQ9Y2D8 614 aa17.15■□□□□ 0.34
CLSTN3-213ENST00000541953 EP300Q09472 2414 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 NEMFO60524 1076 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 LRRN2O75325 713 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 DCNP07585 359 aaKnown RBP17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 LAMP2P13473 410 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 HSP90AA2PQ14568 343 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 EEF1DP3Q658K8 133 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 CDCA2Q69YH5 1023 aaPredicted RBP17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 ADSSL1Q8N142 457 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 CLSTN3Q9BQT9 956 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 PRKD2Q9BZL6 878 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 SNTG2Q9NY99 539 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 FNIP2Q9P278 1114 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 WNT16Q9UBV4 365 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 FBXW11Q9UKB1 542 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 NUMBLQ9Y6R0 609 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 R4GN57 208 aa17.14■□□□□ 0.33
CLSTN3-213ENST00000541953 TRIP11Q15643 1979 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 ANHXE9PGG2 379 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 RECQL4O94761 1208 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 SRFP11831 508 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 GLULP15104 373 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 SPECC1Q5M775 1068 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 PPP4R3CPQ6ZMV5 832 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 CATSPER3Q86XQ3 398 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 NOSTRINQ8IVI9 506 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 STAMQ92783 540 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 FGF14Q92915 247 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 RTP3Q9BQQ7 232 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 KIFC3Q9BVG8 833 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 FOXQ1Q9C009 403 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 FZD8Q9H461 694 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 PLEKHA4Q9H4M7 779 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 PIDD1Q9HB75 910 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 DLGAP2Q9P1A6 1054 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 CACNA1AO00555 2505 aa17.13■□□□□ 0.33
CLSTN3-213ENST00000541953 TADA2AO75478 443 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 ZMYND10O75800 440 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 ATP2B1P20020 1258 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 GUCY1B3Q02153 619 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 FAM171A1Q5VUB5 890 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 POTEHQ6S545 545 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 PARM1Q6UWI2 310 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 RSPO2Q6UXX9 243 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 CYP26C1Q6V0L0 522 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 GRASPQ7Z6J2 395 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 LNX1Q8TBB1 728 aaPredicted RBP17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 HDAC7Q8WUI4 952 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 CCDC43Q96MW1 224 aaKnown RBP17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 CCDC113Q9H0I3 377 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 ARHGEF3Q9NR81 526 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 ZDHHC7Q9NXF8 308 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 FANCMQ8IYD8 2048 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 ZMYM2Q9UBW7 1377 aa17.12■□□□□ 0.33
CLSTN3-213ENST00000541953 STK25O00506 426 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 CCL16O15467 120 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 NR1I2O75469 434 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 MCM7P33993 719 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 NCBP1Q09161 790 aaKnown RBP17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 TUSC3Q13454 348 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 PSMD5Q16401 504 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 CD300LGQ6UXG3 332 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 ITFG1Q8TB96 612 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 HCFC1R1Q9NWW0 138 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 SF3B1O75533 1304 aaKnown RBP eCLIP17.11■□□□□ 0.333e-9■■■■■ 206.8
CLSTN3-213ENST00000541953 CACNA1IQ9P0X4 2223 aa17.11■□□□□ 0.33
CLSTN3-213ENST00000541953 PATJQ8NI35 1801 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 MIA3Q5JRA6 1907 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 LIG1P18858 919 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 ECM1Q16610 540 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 FAM187BQ17R55 369 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 GLRA4Q5JXX5 417 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 CEP57Q86XR8 500 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 HACE1Q8IYU2 909 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 C3orf58Q8NDZ4 430 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms