RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CAMTA2O94983 1202 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 LMNAP02545 664 aaKnown RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 ACADSP16219 412 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 VHLP40337 213 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 GCLCP48506 637 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 CETN1Q12798 172 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 TAF1BQ53T94 588 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 ZC3H12AQ5D1E8 599 aaKnown RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 C4orf33Q8N1A6 199 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 RUSC1Q9BVN2 902 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 WNT8AQ9H1J5 351 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 DENND2DQ9H6A0 471 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 NMRK1Q9NWW6 199 aa13.71□□□□□ -0.21
SFSWAP-209ENST00000540469 ANKRD33BA6NCL7 494 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 GM2AP17900 193 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 NMT1P30419 496 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 GJC1P36383 396 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 SLC12A3P55017 1021 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 HP1BP3Q5SSJ5 553 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 SNX30Q5VWJ9 437 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 CATSPER3Q86XQ3 398 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ZDHHC14Q8IZN3 488 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 KIFAP3Q92845 792 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ZNF653Q96CK0 615 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 DNAJC18Q9H819 358 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 RGL1Q9NZL6 768 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 NENFQ9UMX5 172 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ASTN1O14525 1302 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ATP9AO75110 1047 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 BTDP43251 543 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ERFP50548 548 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 CCDC15Q0P6D6 951 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 PICALMQ13492 652 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 LBRQ14739 615 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ZC2HC1CQ53FD0 456 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ASPRV1Q53RT3 343 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 DPY19L2P1Q6NXN4 242 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 INPP5DQ92835 1189 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 SMC6Q96SB8 1091 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 TMX4Q9H1E5 349 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 BCAS3Q9H6U6 928 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 RIOX1Q9H6W3 641 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 NPHS2Q9NP85 383 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 UBN1Q9NPG3 1134 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 A0A1B0GUL6 1792 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 COL18A1P39060 1754 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 DCCP43146 1447 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 PNMA6FA0A0J9YX94 578 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ABLIM1O14639 778 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ITIH2P19823 946 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ZNF76P36508 570 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 NT5C2P49902 561 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 WASHC2DQ5SRD0 308 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 TTBK2Q6IQ55 1244 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 C11orf63Q6NUN7 778 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 IRGCQ6NXR0 463 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 CPNE8Q86YQ8 564 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 WDR66Q8TBY9 1149 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ZNF564Q8TBZ8 553 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 CRAMP1Q96RY5 1269 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 NUP85Q9BW27 656 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 ANKRD2Q9GZV1 360 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 NINJ2Q9NZG7 142 aa13.7□□□□□ -0.22
SFSWAP-209ENST00000540469 DLEC1Q9Y238 1755 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CBWD6Q4V339 395 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 TNFAIP8L3Q5GJ75 292 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CBWD3Q5JTY5 395 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CBWD5Q5RIA9 395 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 RFX8Q6ZV50 586 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 PRUNE1Q86TP1 453 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 APLFQ8IW19 511 aaPredicted RBP13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 ADGRF4Q8IZF3 695 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 NAP1L4Q99733 375 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 FAM118BQ9BPY3 351 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 WHRNQ9P202 907 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 LRCH1Q9Y2L9 728 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 ALS2Q96Q42 1657 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 GTPBP10A4D1E9 387 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CFAP69A5D8W1 941 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CAPN9O14815 690 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CACNA2D1P54289 1103 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 ACVR2BQ13705 512 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 KCTD1Q719H9 257 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 SLFN12Q8IYM2 578 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.69□□□□□ -0.224e-7■■■□□ 17.6
SFSWAP-209ENST00000540469 RABGAP1Q9Y3P9 1069 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 LRP5O75197 1615 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 FAM196BA6NMK8 535 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 UBTFL6P0CB48 400 aaPredicted RBP13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 HOXD13P35453 343 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 COG2Q14746 738 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 CCDC125Q86Z20 511 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 SCG3Q8WXD2 468 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 VPS37BQ9H9H4 285 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 WDR35Q9P2L0 1181 aa13.69□□□□□ -0.22
SFSWAP-209ENST00000540469 A0A0G2JND7 137 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 GYG2O15488 501 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 MAP3K7O43318 606 aa13.68□□□□□ -0.22
SFSWAP-209ENST00000540469 EDIL3O43854 480 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms