RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 RASGRF1Q13972 1273 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 PPP1R18Q6NYC8 613 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 GPBP1L1Q9HC44 474 aaPredicted RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 PCDHGB4Q9UN71 923 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 POLIQ9UNA4 740 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 TARSL2A2RTX5 802 aaKnown RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ERVV-1B6SEH8 477 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 CCND1P24385 295 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 NNMTP40261 264 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 STX3Q13277 289 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ORC2Q13416 577 aaPredicted RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 Q4G0T1 1027 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 GOLPH3LQ9H4A5 285 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 PNMA3Q9UL41 463 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ERVK-7P63135 1459 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 A0A1B0GW55 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4L2P0CJ85 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4L3P0CJ86 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4L4P0CJ87 422 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4L5P0CJ88 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4L6P0CJ89 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4L7P0CJ90 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ENOSF1Q7L5Y1 443 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 TTC39CQ8N584 583 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ZNF555Q8NEP9 628 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ASIC4Q96FT7 647 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 FAM20AQ96MK3 541 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 C2orf40Q9H1Z8 148 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 UNC45AQ9H3U1 944 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DUX4Q9UBX2 424 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 AFF4Q9UHB7 1163 aaKnown RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 FBXL5Q9UKA1 691 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 AURKCQ9UQB9 309 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 CFAP65Q6ZU64 1925 aaKnown RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 ATP7BP35670 1465 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 DENND3A2RUS2 1198 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 EIF3HO15372 352 aaKnown RBP eCLIP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 RAD17O75943 681 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 CTCFP49711 727 aaPredicted RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 GRIN1Q05586 938 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 STAT4Q14765 748 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 FASTKD5Q7L8L6 764 aaKnown RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 TAS2R42Q7RTR8 314 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 TRMT2AQ8IZ69 625 aaKnown RBP10.5□□□□□ -0.73
COL4A6-208ENST00000538570 AFG1LQ8WV93 481 aa10.5□□□□□ -0.73
COL4A6-208ENST00000538570 CASP1P29466 404 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ABCE1P61221 599 aaKnown RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 NME3Q13232 169 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SH3KBP1Q96B97 665 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ZFYVE19Q96K21 471 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 PARVAQ9NVD7 372 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SENP1Q9P0U3 644 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 DLGAP2Q9P1A6 1054 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 IGSF1Q8N6C5 1336 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 USP17L5A8MUK1 530 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 MAP4P27816 1152 aaKnown RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 KRT17Q04695 432 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SPATA21Q7Z572 469 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ASZ1Q8WWH4 475 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 HDAC6Q9UBN7 1215 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ADGRG1Q9Y653 693 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 NLRP1Q9C000 1473 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 APOL1O14791 398 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 PRPF4O43172 522 aaKnown RBP eCLIP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SEC24DO94855 1032 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 PRR29P0C7W0 189 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 KRT76Q01546 638 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 DMC1Q14565 340 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 CNGA3Q16281 694 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 TJAP1Q5JTD0 557 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ADCK1Q86TW2 530 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 PDLIM2Q96JY6 352 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 STRBPQ96SI9 672 aaKnown RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 RMDN3Q96TC7 470 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 COA1Q9GZY4 146 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ADNPQ9H2P0 1102 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 RNPEPQ9H4A4 650 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SLC40A1Q9NP59 571 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 FEM1BQ9UK73 627 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 CLASP1Q7Z460 1538 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 PAX7P23759 505 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ALDH18A1P54886 795 aaKnown RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 TOB2Q14106 344 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 TRADDQ15628 312 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 OR6P1Q8NGX9 317 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 URGCPQ8TCY9 931 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 DNAJC9Q8WXX5 260 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 CLMNQ96JQ2 1002 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 TSR3Q9UJK0 312 aaKnown RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SAMD9LQ8IVG5 1584 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 ARSEP51690 589 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 GRAPQ13588 217 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 TWF2Q6IBS0 349 aaKnown RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 FMR1NBQ8N0W7 255 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 GRAPLQ8TC17 118 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 DTX3LQ8TDB6 740 aa10.49□□□□□ -0.73
COL4A6-208ENST00000538570 SH3RF3Q8TEJ3 882 aaPredicted RBP10.49□□□□□ -0.73
COL4A6-208ENST00000538570 COG1Q8WTW3 980 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms