RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 SFR1Q86XK3 245 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 SP7Q8TDD2 431 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 TGS1Q96RS0 853 aaKnown RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 FDXACB1Q9BRP7 624 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 FTHL17Q9BXU8 183 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 TTC26A0AVF1 554 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 DENND3A2RUS2 1198 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 GPR182O15218 404 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 TBCAO75347 108 aaKnown RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 TUBB4AP04350 444 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 DARSP14868 501 aaKnown RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 GTF2F1P35269 517 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 KRT9P35527 623 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 CASP5P51878 434 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 POLGP54098 1239 aaPredicted RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 ERVK-21P61565 698 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 FKBP3Q00688 224 aaKnown RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 FKBP15Q5T1M5 1219 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 RINT1Q6NUQ1 792 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 NELFCDQ8IXH7 590 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 KIF18AQ8NI77 898 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 SLC7A3Q8WY07 619 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 NLRP4Q96MN2 994 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 DESI2Q9BSY9 194 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 KCTD10Q9H3F6 313 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 DHX33Q9H6R0 707 aaKnown RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 RC3H2Q9HBD1 1191 aaKnown RBP13.03□□□□□ -0.32
CLIP1-208ENST00000537004 TTC28Q96AY4 2481 aa13.03□□□□□ -0.32
CLIP1-208ENST00000537004 DYNC1I1O14576 645 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 SYCP1Q15431 976 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 MAN2A1Q16706 1144 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 VWA3BQ502W6 1294 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 PAN2Q504Q3 1202 aaKnown RBP13.02□□□□□ -0.33
CLIP1-208ENST00000537004 RAD9BQ6WBX8 426 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 TMTC1Q8IUR5 882 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 PRPF31Q8WWY3 499 aaKnown RBP13.02□□□□□ -0.33
CLIP1-208ENST00000537004 NACC1Q96RE7 527 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 ERGIC2Q96RQ1 377 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 NDST4Q9H3R1 872 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 CAPN11Q9UMQ6 739 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 LUC7L2Q9Y383 392 aaKnown RBP13.02□□□□□ -0.33
CLIP1-208ENST00000537004 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 TTC3P53804 2025 aa13.02□□□□□ -0.33
CLIP1-208ENST00000537004 GOLGA6L9A6NEM1 432 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 DKC1O60832 514 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLIP1-208ENST00000537004 DGKIO75912 1065 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 CCDC175P0C221 793 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 LINC00271P0C7V0 271 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 EPC2Q52LR7 807 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 C1orf186Q6ZWK4 172 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 EPM2AIP1Q7L775 607 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-208ENST00000537004 OTUD6AQ7L8S5 288 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 ZNF689Q96CS4 500 aaPredicted RBP13.01□□□□□ -0.33
CLIP1-208ENST00000537004 CEP63Q96MT8 703 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 NUP58Q9BVL2 599 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 XPNPEP1Q9NQW7 623 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 COL4A3BPQ9Y5P4 624 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 MYO7AQ13402 2215 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 C9IYK1 514 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 SRGAP2CP0DJJ0 459 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 GAP43P17677 238 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 TRIM21P19474 475 aaKnown RBP13.01□□□□□ -0.33
CLIP1-208ENST00000537004 KLK7P49862 253 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 ETF1P62495 437 aaKnown RBP13.01□□□□□ -0.33
CLIP1-208ENST00000537004 DSC3Q14574 896 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 EMC2Q15006 297 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 FAM102BQ5T8I3 360 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 TRIM65Q6PJ69 517 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 CYP26C1Q6V0L0 522 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 SYT10Q6XYQ8 523 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 PPP4R3CPQ6ZMV5 832 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 OR8K1Q8NGG5 319 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 NEK9Q8TD19 979 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 DNAJC7Q99615 494 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 TTYH3Q9C0H2 523 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 MINDY3Q9H8M7 445 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 MRPL44Q9H9J2 332 aaKnown RBP13.01□□□□□ -0.33
CLIP1-208ENST00000537004 IFT122Q9HBG6 1241 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 RGS18Q9NS28 235 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 HCSTQ9UBK5 93 aa13.01□□□□□ -0.33
CLIP1-208ENST00000537004 ADGRA3Q8IWK6 1321 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 CSPG5O95196 566 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 LYPLA2O95372 231 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 FGFR1P11362 822 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 RARRES1P49788 294 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 LAMTOR4Q0VGL1 99 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 BTG3Q14201 252 aaPredicted RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 EDRF1Q3B7T1 1238 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 SLC24A5Q71RS6 500 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 MAEAQ7L5Y9 396 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 MTERF4Q7Z6M4 381 aaKnown RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 NPAS4Q8IUM7 802 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 PHF6Q8IWS0 365 aaKnown RBP eCLIP13□□□□□ -0.33
CLIP1-208ENST00000537004 FBXO22Q8NEZ5 403 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 PCMTD1Q96MG8 357 aaPredicted RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 GCOM2Q9BZD3 368 aaPredicted RBP13□□□□□ -0.33
CLIP1-208ENST00000537004 POLD4Q9HCU8 107 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 OLFML3Q9NRN5 406 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 ADGRG1Q9Y653 693 aa13□□□□□ -0.33
CLIP1-208ENST00000537004 FAM13AO94988 1023 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms