RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ITK	Q08881	620 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	SP140	Q13342	867 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	FHL2	Q14192	279 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	ACAP2	Q15057	778 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	TIGD2	Q4W5G0	525 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	FAM47A	Q5JRC9	791 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	LY6G5C	Q5SRR4	150 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	PGM2L1	Q6PCE3	622 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	KCNV1	Q6PIU1	500 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	LHFPL2	Q6ZUX7	228 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	KCNK18	Q7Z418	384 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	XYLT1	Q86Y38	959 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	PQLC1	Q8N2U9	271 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	NEU4	Q8WWR8	484 aa	Predicted RBP	3.75	□□□□□ -1.81
CD44-238	ENST00000534296	MTMR8	Q96EF0	704 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	SORCS2	Q96PQ0	1159 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	PRRX2	Q99811	253 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	C7orf25	Q9BPX7	421 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	KCNH6	Q9H252	994 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	MMRN2	Q9H8L6	949 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	VTA1	Q9NP79	307 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	TRPM5	Q9NZQ8	1165 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	TRPS1	Q9UHF7	1281 aa		3.75	□□□□□ -1.81
CD44-238	ENST00000534296	WDR33	Q9C0J8	1336 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	TMEM191C	A6NGB0	347 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	TRIM75P	A6NK02	468 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	XPOT	O43592	962 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	NARS	O43776	548 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	RPS6KA4	O75676	772 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ABHD16A	O95870	558 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ITGB1	P05556	798 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	GSPT1	P15170	499 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ATP5J	P18859	108 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	CDK11B	P21127	795 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	AGXT	P21549	392 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	MCAM	P43121	646 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	MTNR1B	P49286	362 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	CREM	Q03060	361 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	MGAT2	Q10469	447 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	PTPA	Q15257	358 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	BMT2	Q1RMZ1	405 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	SYDE2	Q5VT97	1194 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	C1QL3	Q5VWW1	255 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ARMC6	Q6NXE6	501 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	LRRC55	Q6ZSA7	311 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ZNF572	Q7Z3I7	529 aa	Predicted RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	GDF7	Q7Z4P5	450 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ZFPM1	Q8IX07	1006 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	CMIP	Q8IY22	773 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	TRMT2A	Q8IZ69	625 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296		Q8N1X5	172 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	AMER2	Q8N7J2	671 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	CASKIN2	Q8WXE0	1202 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	CLIP3	Q96DZ5	547 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	LSM14B	Q9BX40	385 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	CPEB1	Q9BZB8	566 aa	Known RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	TRIM8	Q9BZR9	551 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	SCAND2P	Q9GZW5	306 aa	Predicted RBP	3.74	□□□□□ -1.81
CD44-238	ENST00000534296	FZD1	Q9UP38	647 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	ZMYM3	Q14202	1370 aa		3.74	□□□□□ -1.81
CD44-238	ENST00000534296	SHTN1	A0MZ66	631 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	KLHL33	A6NCF5	533 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PLSCR1	O15162	318 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	MYBL2	P10244	700 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	CCND1	P24385	295 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	APOBEC3A	P31941	199 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-238	ENST00000534296	INHBC	P55103	352 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	RAP2B	P61225	183 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PURA	Q00577	322 aa	Known RBP	3.73	□□□□□ -1.81
CD44-238	ENST00000534296	NHLH2	Q02577	135 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	SPDYE7P	Q495Y7	208 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PPP4R3A	Q6IN85	833 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	GPRIN1	Q7Z2K8	1008 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PNMA8A	Q86V59	439 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PROKR1	Q8TCW9	393 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	LENG9	Q96B70	501 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	MRI	Q9BWK5	157 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PCED1A	Q9H1Q7	454 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	SLC2A4RG	Q9NR83	387 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	SCOC	Q9UIL1	159 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	ATP11B	Q9Y2G3	1177 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	PCDHGA2	Q9Y5H1	932 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	COL4A3BP	Q9Y5P4	624 aa		3.73	□□□□□ -1.81
CD44-238	ENST00000534296	CXorf49	A8MYA2	514 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-238	ENST00000534296	ADCY6	O43306	1168 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	GPR32	O75388	356 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	RHOBTB3	O94955	611 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	MT-CO1	P00395	513 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	POMC	P01189	267 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	POU3F3	P20264	500 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-238	ENST00000534296	SREBF1	P36956	1147 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	KRT85	P78386	507 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	KLF10	Q13118	480 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	MFSD14B	Q5SR56	506 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	RSPH3	Q86UC2	560 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	LILRA3	Q8N6C8	439 aa	Predicted RBP	3.72	□□□□□ -1.81
CD44-238	ENST00000534296	RNF169	Q8NCN4	708 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	REPS2	Q8NFH8	660 aa		3.72	□□□□□ -1.81
CD44-238	ENST00000534296	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	3.72	□□□□□ -1.81

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