RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MCL1Q07820 350 aa21.75■■□□□ 1.07
CPSF1-209ENST00000532725 ALKAL1Q6UXT8 129 aa21.75■■□□□ 1.07
CPSF1-209ENST00000532725 MAP4K3Q8IVH8 894 aa21.75■■□□□ 1.07
CPSF1-209ENST00000532725 CCDC65Q8IXS2 484 aa21.75■■□□□ 1.07
CPSF1-209ENST00000532725 MRPS27Q92552 414 aaKnown RBP21.75■■□□□ 1.07
CPSF1-209ENST00000532725 PAGE5Q96GU1 130 aa21.75■■□□□ 1.07
CPSF1-209ENST00000532725 FAM193BQ96PV7 902 aaPredicted RBP21.75■■□□□ 1.07
CPSF1-209ENST00000532725 USP25Q9UHP3 1055 aa21.75■■□□□ 1.07
CPSF1-209ENST00000532725 REV3LO60673 3130 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 PTGESO14684 152 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 CASP1P29466 404 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 SYKP43405 635 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 AFMP43652 599 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 KRT17Q04695 432 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 COASYQ13057 564 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 SLC39A4Q6P5W5 647 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 TMEM173Q86WV6 379 aaPredicted RBP21.74■■□□□ 1.07
CPSF1-209ENST00000532725 CEP57L1Q8IYX8 460 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 FSIP1Q8NA03 581 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 BICD1Q96G01 975 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 IGSF21Q96ID5 467 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 FGFBP2Q9BYJ0 223 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 BLZF1Q9H2G9 400 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 GOLPH3LQ9H4A5 285 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 PUF60Q9UHX1 559 aaKnown RBP21.74■■□□□ 1.07
CPSF1-209ENST00000532725 FAN1Q9Y2M0 1017 aa21.74■■□□□ 1.07
CPSF1-209ENST00000532725 ANKRD63C9JTQ0 380 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 NRP1O14786 923 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 HNRNPDLO14979 420 aaKnown RBP21.73■■□□□ 1.07
CPSF1-209ENST00000532725 IRS1P35568 1242 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 LIG4P49917 911 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 CASP5P51878 434 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 ERVFC1P60507 584 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 OSTNP61366 133 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 ASIC1P78348 528 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 KCNA1Q09470 495 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 GRIK3Q13003 919 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 CUL4BQ13620 913 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 NOLC1Q14978 699 aaKnown RBP eCLIP21.73■■□□□ 1.07
CPSF1-209ENST00000532725 XKR4Q5GH76 650 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 GRAMD1CQ8IYS0 662 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 HVCN1Q96D96 273 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 ACAP3Q96P50 834 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 CCDC94Q9BW85 323 aaPredicted RBP21.73■■□□□ 1.07
CPSF1-209ENST00000532725 NSUN3Q9H649 340 aaKnown RBP21.73■■□□□ 1.07
CPSF1-209ENST00000532725 ANKFY1Q9P2R3 1169 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 PCDHB13Q9Y5F0 798 aa21.73■■□□□ 1.07
CPSF1-209ENST00000532725 A0A0B4J269 797 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 FSCN2O14926 492 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 MEFVO15553 781 aaPredicted RBP21.72■■□□□ 1.07
CPSF1-209ENST00000532725 MYBP10242 640 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 EHHADHQ08426 723 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 NAB2Q15742 525 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 TPRNQ4KMQ1 711 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 TIGD5Q53EQ6 642 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 UNC13DQ70J99 1090 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 BCL7CQ8WUZ0 217 aaPredicted RBP21.72■■□□□ 1.07
CPSF1-209ENST00000532725 HPS3Q969F9 1004 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 RPS6KC1Q96S38 1066 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 IKZF4Q9H2S9 585 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 TLR9Q9NR96 1032 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 CHMP5Q9NZZ3 219 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 STYXL1Q9Y6J8 313 aa21.72■■□□□ 1.07
CPSF1-209ENST00000532725 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-209ENST00000532725 PVALEFA0A1B0GWK0 134 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 GCNT3O95395 438 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 THP07101 528 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 HARSP12081 509 aaKnown RBP21.71■■□□□ 1.07
CPSF1-209ENST00000532725 ALCAMQ13740 583 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 SEZ6Q53EL9 994 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 TCEAL5Q5H9L2 206 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 L1TD1Q5T7N2 865 aaKnown RBP21.71■■□□□ 1.07
CPSF1-209ENST00000532725 DDX53Q86TM3 631 aaKnown RBP21.71■■□□□ 1.07
CPSF1-209ENST00000532725 TMEM169Q96HH4 297 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 ACCSQ96QU6 501 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 PRDM6Q9NQX0 595 aa21.71■■□□□ 1.07
CPSF1-209ENST00000532725 SMIM28A0A1B0GU29 152 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 TISP43B9A030 160 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 FAM189A1O60320 539 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 ZNF202O95125 648 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 MATR3P43243 847 aaKnown RBP eCLIP21.7■■□□□ 1.06
CPSF1-209ENST00000532725 OR1G1P47890 313 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 YARSP54577 528 aaKnown RBP21.7■■□□□ 1.06
CPSF1-209ENST00000532725 TUSC3Q13454 348 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 SLC10A6Q3KNW5 377 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 PDE12Q6L8Q7 609 aaKnown RBP21.7■■□□□ 1.06
CPSF1-209ENST00000532725 GLIS3Q8NEA6 775 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 MICAL1Q8TDZ2 1067 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 PPP1R10Q96QC0 940 aaKnown RBP21.7■■□□□ 1.06
CPSF1-209ENST00000532725 VN1R3Q9BXE9 311 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 TOPORSQ9NS56 1045 aaPredicted RBP21.7■■□□□ 1.06
CPSF1-209ENST00000532725 MARCH5Q9NX47 278 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 PCDHGC5Q9Y5F6 944 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 PLXNA4Q9HCM2 1894 aa21.7■■□□□ 1.06
CPSF1-209ENST00000532725 KLRC4O43908 158 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 PRPF6O94906 941 aaKnown RBP21.69■■□□□ 1.06
CPSF1-209ENST00000532725 CSPG5O95196 566 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 EFEMP2O95967 443 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 CLTAP09496 248 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 ADSSP30520 456 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms