RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	HSP90B1	P14625	803 aa	Known RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	IL2RB	P14784	551 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	ALOX15	P16050	662 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	ZSCAN20	P17040	1043 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	ACO1	P21399	889 aa	Known RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	AKAP5	P24588	427 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	PTPN7	P35236	360 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	MAGEA10	P43363	369 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	CDC42EP1	Q00587	391 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	PPP2R5A	Q15172	486 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	NFE2	Q16621	373 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	C3orf36	Q3SXR2	165 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	RRP12	Q5JTH9	1297 aa	Known RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	METTL24	Q5JXM2	366 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	RHOT1	Q8IXI2	618 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	JPH3	Q8WXH2	748 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	ST8SIA2	Q92186	375 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	DPF2	Q92785	391 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	DVL3	Q92997	716 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	WWC2-AS2	Q96NR7	200 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	CDK5RAP1	Q96SZ6	601 aa	Known RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	KRTAP3-1	Q9BYR8	98 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	KLC2	Q9H0B6	622 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	TDP1	Q9NUW8	608 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	5	□□□□□ -1.61
CD44-233	ENST00000531141	CLCA2	Q9UQC9	943 aa		5	□□□□□ -1.61
CD44-233	ENST00000531141	MFAP3L	O75121	409 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	SNRPA1	P09661	255 aa	Known RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	U2AF1L5	P0DN76	240 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	EDNRB	P24530	442 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	U2AF1	Q01081	240 aa	Known RBP eCLIP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	PTH1R	Q03431	593 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	MTM1	Q13496	603 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	RAB39A	Q14964	217 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	FAM47A	Q5JRC9	791 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	MFSD14B	Q5SR56	506 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	CXorf57	Q6NSI4	855 aa	Known RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141		Q6ZSN1	163 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	HTR3D	Q70Z44	454 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	FAM83A	Q86UY5	434 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	RAVER1	Q8IY67	606 aa	Known RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	MB21D1	Q8N884	522 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	REPS2	Q8NFH8	660 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	OR52N2	Q8NGI0	321 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	CEP95	Q96GE4	821 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	AIFM3	Q96NN9	605 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	ADO	Q96SZ5	270 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	C1QTNF3	Q9BXJ4	246 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	HECA	Q9UBI9	543 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	G3BP2	Q9UN86	482 aa	Known RBP	4.99	□□□□□ -1.61
CD44-233	ENST00000531141	LIMCH1	Q9UPQ0	1083 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	HDAC5	Q9UQL6	1122 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	ATRNL1	Q5VV63	1379 aa		4.99	□□□□□ -1.61
CD44-233	ENST00000531141	PRR5-ARHGAP8	B1AHC4	643 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ZNF20	P17024	532 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ACRV1	P26436	265 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	CYP2C19	P33261	490 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ALDH1A3	P47895	512 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ADAM17	P78536	824 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	R3HDM1	Q15032	1099 aa	Known RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	PRKD1	Q15139	912 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ATP2B3	Q16720	1220 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	AFMID	Q63HM1	303 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ZNF585A	Q6P3V2	769 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	RSPH3	Q86UC2	560 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	SGMS1	Q86VZ5	419 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	DRC7	Q8IY82	874 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	CCHCR1	Q8TD31	782 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	NSUN6	Q8TEA1	469 aa	Known RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	CPPED1	Q9BRF8	314 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	LSM14B	Q9BX40	385 aa	Known RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	KCNH6	Q9H252	994 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	NMRK2	Q9NPI5	230 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-233	ENST00000531141	ZMYM3	Q14202	1370 aa		4.98	□□□□□ -1.61
CD44-233	ENST00000531141	NCAN	O14594	1321 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	KRTAP23-1	A1A580	65 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	CXorf49	A8MYA2	514 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-233	ENST00000531141	GOLGA6L6	A8MZA4	724 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	TSPAN6	O43657	245 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	OFD1	O75665	1012 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	AMY1A	P04745	511 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	POU2F2	P09086	479 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	HMGB1	P09429	215 aa	Known RBP	4.97	□□□□□ -1.61
CD44-233	ENST00000531141	RAP2A	P10114	183 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	DDC	P20711	480 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	MAN2A2	P49641	1150 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	RABGGTB	P53611	331 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	ATP8B2	P98198	1209 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	TARDBP	Q13148	414 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
CD44-233	ENST00000531141	IL10RA	Q13651	578 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	FAM102B	Q5T8I3	360 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	NAIF1	Q69YI7	327 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-233	ENST00000531141	NXN	Q6DKJ4	435 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	OTUD7B	Q6GQQ9	843 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	KRTAP5-3	Q6L8H2	238 aa		4.97	□□□□□ -1.61
CD44-233	ENST00000531141	DRICH1	Q6PGQ1	229 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-233	ENST00000531141	USP45	Q70EL2	814 aa		4.97	□□□□□ -1.61

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