RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 PROSER1Q86XN7 944 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 CCDC83Q8IWF9 413 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 SMAP1Q8IYB5 467 aaPredicted RBP9.51□□□□□ -0.89
SSBP3-212ENST00000528930 ETNPPLQ8TBG4 499 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 TRAPPC12Q8WVT3 735 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 DNAJB3Q8WWF6 145 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 RIT2Q99578 217 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 LSM14BQ9BX40 385 aaKnown RBP9.51□□□□□ -0.89
SSBP3-212ENST00000528930 TUBE1Q9UJT0 475 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 RAB23Q9ULC3 237 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 LZTS1Q9Y250 596 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 PCDHA10Q9Y5I2 948 aa9.51□□□□□ -0.89
SSBP3-212ENST00000528930 CCDC194A0A1B0GVG4 234 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 WDR64B1ANS9 1081 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 SLC37A4O43826 429 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 HBP1O60381 514 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 C1QL1O75973 258 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 CAPNS1P04632 268 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PSAPP07602 524 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 KRT2P35908 639 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 MAGEA9P43362 315 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 LETM2Q2VYF4 491 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 ATAT1Q5SQI0 421 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 RARS2Q5T160 578 aaKnown RBP9.5□□□□□ -0.89
SSBP3-212ENST00000528930 LRCH2Q5VUJ6 765 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 FAM160B1Q5W0V3 765 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PPP4R3AQ6IN85 833 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PSAPL1Q6NUJ1 521 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PDXDC2PQ6P474 469 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 MTHFD1LQ6UB35 978 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PIK3AP1Q6ZUJ8 805 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 NEK8Q86SG6 692 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 RETREG3Q86VR2 466 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 GPR152Q8TDT2 470 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 LINC01599Q8WXQ3 324 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 TNPO1Q92973 898 aaKnown RBP9.5□□□□□ -0.89
SSBP3-212ENST00000528930 ZSCAN31Q96LW9 406 aaPredicted RBP9.5□□□□□ -0.89
SSBP3-212ENST00000528930 LLPHQ9BRT6 129 aaKnown RBP9.5□□□□□ -0.89
SSBP3-212ENST00000528930 TEKT3Q9BXF9 490 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 BCO2Q9BYV7 579 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 UNC45AQ9H3U1 944 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 KCNMB3Q9NPA1 279 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 DISC1Q9NRI5 854 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 GABBR1Q9UBS5 961 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 DDX25Q9UHL0 483 aaKnown RBP9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PCDHGC3Q9UN70 934 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 PCDHA2Q9Y5H9 948 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 ACACAQ13085 2346 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 IGSF9BQ9UPX0 1349 aa9.5□□□□□ -0.89
SSBP3-212ENST00000528930 MYH9P35579 1960 aaKnown RBP9.5□□□□□ -0.89
SSBP3-212ENST00000528930 SMIM35A0A1B0GVV1 85 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 BTBD18B2RXH4 712 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 ZNF862O60290 1169 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 GAS7O60861 476 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 TOP3BO95985 862 aaKnown RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 TDGF1P13385 188 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 KLRC1P26715 233 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 DEKP35659 375 aaKnown RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 RABEP1Q15276 862 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 LPAL2Q16609 132 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 UGCGQ16739 394 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 PAN2Q504Q3 1202 aaKnown RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 ZNF484Q5JVG2 852 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 DCLRE1AQ6PJP8 1040 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 C19orf48Q6RUI8 117 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 CCDC149Q6ZUS6 474 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 NPAS4Q8IUM7 802 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 DIS3L2Q8IYB7 885 aaKnown RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 CELF5Q8N6W0 485 aaKnown RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 FEZF2Q8TBJ5 459 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 HAS1Q92839 578 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 DDX23Q9BUQ8 820 aaKnown RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 SCNM1Q9BWG6 230 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 FAM49AQ9H0Q0 323 aaPredicted RBP9.49□□□□□ -0.89
SSBP3-212ENST00000528930 DZANK1Q9NVP4 752 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 SAMM50Q9Y512 469 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 PCDHB12Q9Y5F1 795 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 CDY2AQ9Y6F7 541 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 ASXL3Q9C0F0 2248 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 FREM2Q5SZK8 3169 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 COL1A2P08123 1366 aa9.49□□□□□ -0.89
SSBP3-212ENST00000528930 EML1O00423 815 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 CHMP2AO43633 222 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 CCNT1O60563 726 aaKnown RBP9.48□□□□□ -0.89
SSBP3-212ENST00000528930 KRT38O76015 456 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 STBD1O95210 358 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 C22orf31O95567 290 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 RPLP2P05387 115 aaKnown RBP9.48□□□□□ -0.89
SSBP3-212ENST00000528930 GCFC2P16383 781 aaKnown RBP9.48□□□□□ -0.89
SSBP3-212ENST00000528930 SFNP31947 248 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 JAK3P52333 1124 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 MRPS6P82932 125 aaKnown RBP9.48□□□□□ -0.89
SSBP3-212ENST00000528930 GUCY1B3Q02153 619 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 ZNF252P-AS1Q0IIN9 211 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 LPIN1Q14693 890 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 FBXO47Q5MNV8 452 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 TSSK4Q6SA08 328 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 TRMT1LQ7Z2T5 733 aaKnown RBP9.48□□□□□ -0.89
SSBP3-212ENST00000528930 MIER3Q7Z3K6 550 aa9.48□□□□□ -0.89
SSBP3-212ENST00000528930 RSPH3Q86UC2 560 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms