RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NOVA2Q9UNW9 492 aaKnown RBP22.81■■□□□ 1.24
VPS28-205ENST00000526204 VWA5AO00534 786 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 KIAA0754O94854 1291 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 ABCD1P33897 745 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 MARCKSL1P49006 195 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 CDR1P51861 262 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 PMS2P54278 862 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 PLTPP55058 493 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 CYP24A1Q07973 514 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 MTMR2Q13614 643 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 AADACL2Q6P093 401 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 POMGNT1Q8WZA1 660 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 ZNF653Q96CK0 615 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 CEP170P1Q96L14 293 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 PLVAPQ9BX97 442 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 SNX24Q9Y343 169 aa22.81■■□□□ 1.24
VPS28-205ENST00000526204 E7EVH7 732 aa22.8■■□□□ 1.24
VPS28-205ENST00000526204 RTP1P59025 263 aa22.8■■□□□ 1.24
VPS28-205ENST00000526204 TTC31Q49AM3 519 aaPredicted RBP22.8■■□□□ 1.24
VPS28-205ENST00000526204 BRDTQ58F21 947 aaPredicted RBP22.8■■□□□ 1.24
VPS28-205ENST00000526204 YTHDF3Q7Z739 585 aaKnown RBP22.8■■□□□ 1.24
VPS28-205ENST00000526204 CAMKK2Q96RR4 588 aa22.8■■□□□ 1.24
VPS28-205ENST00000526204 FAM129AQ9BZQ8 928 aa22.8■■□□□ 1.24
VPS28-205ENST00000526204 MTRF1LQ9UGC7 380 aaKnown RBP22.8■■□□□ 1.24
VPS28-205ENST00000526204 TULP1O00294 542 aaPredicted RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 ZC3H11AO75152 810 aaKnown RBP eCLIP22.79■■□□□ 1.247e-6■■■■■ 33.7
VPS28-205ENST00000526204 PYGMP11217 842 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 GARTP22102 1010 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 RWDD2BP57060 319 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 TBC1D10BQ4KMP7 808 aaPredicted RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 ACAD10Q6JQN1 1059 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 CCDC137Q6PK04 289 aaKnown RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 ZDHHC24Q6UX98 284 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 MCPH1Q8NEM0 835 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 TAS1R2Q8TE23 839 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 POP1Q99575 1024 aaKnown RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 KIFC3Q9BVG8 833 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 TAOK3Q9H2K8 898 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 CNOT10Q9H9A5 744 aaKnown RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.79■■□□□ 1.241e-6■■■■■ 37.9
VPS28-205ENST00000526204 GMNCA6NCL1 334 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 H0YCG3 227 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 ATMINO43313 823 aaPredicted RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 NR3C2P08235 984 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 PAEPP09466 180 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 SEC24CP53992 1094 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 GCNT1Q02742 428 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 DGKZQ13574 1117 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 BAATQ14032 418 aaPredicted RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 CROCCP2Q86T23 111 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 SLC13A5Q86YT5 568 aaPredicted RBP22.79■■□□□ 1.24
VPS28-205ENST00000526204 GPD1LQ8N335 351 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 FBXO25Q8TCJ0 367 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 RNF146Q9NTX7 359 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 GRHL1Q9NZI5 618 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 GABBR1Q9UBS5 961 aa22.79■■□□□ 1.24
VPS28-205ENST00000526204 MEFVO15553 781 aaPredicted RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 DGAT1O75907 488 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 FNTAP49354 379 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 MAGOHP61326 146 aaKnown RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 DENND2CQ68D51 928 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 SV2AQ7L0J3 742 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 DDX1Q92499 740 aaKnown RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 TLCD1Q96CP7 247 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 ACP6Q9NPH0 428 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 PPANQ9NQ55 473 aaKnown RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 CHORDC1Q9UHD1 332 aaPredicted RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 KCNG1Q9UIX4 513 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 TRAPPC3O43617 180 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 PSAPP07602 524 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 ZNF280AP59817 542 aaPredicted RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 BYSLQ13895 437 aaKnown RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 SLC39A4Q6P5W5 647 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 BSNDQ8WZ55 320 aa22.78■■□□□ 1.24
VPS28-205ENST00000526204 CNOT7Q9UIV1 285 aaKnown RBP22.78■■□□□ 1.24
VPS28-205ENST00000526204 HNRNPDLO14979 420 aaKnown RBP22.77■■□□□ 1.24
VPS28-205ENST00000526204 COILP38432 576 aaPredicted RBP22.77■■□□□ 1.24
VPS28-205ENST00000526204 KCTD19Q17RG1 926 aaPredicted RBP22.77■■□□□ 1.24
VPS28-205ENST00000526204 TTC27Q6P3X3 843 aa22.77■■□□□ 1.24
VPS28-205ENST00000526204 MICALL1Q8N3F8 863 aa22.77■■□□□ 1.24
VPS28-205ENST00000526204 C12orf50Q8NA57 414 aaPredicted RBP22.77■■□□□ 1.24
VPS28-205ENST00000526204 JDP2Q8WYK2 163 aa22.77■■□□□ 1.24
VPS28-205ENST00000526204 PGM2Q96G03 612 aa22.77■■□□□ 1.24
VPS28-205ENST00000526204 EPB41L4BQ9H329 900 aa22.77■■□□□ 1.24
VPS28-205ENST00000526204 KIAA1586Q9HCI6 787 aa22.77■■□□□ 1.24
VPS28-205ENST00000526204 SCAF8Q9UPN6 1271 aaKnown RBP22.77■■□□□ 1.24
VPS28-205ENST00000526204 ZNF862O60290 1169 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 GRIN3BO60391 1043 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 RPL21P46778 160 aaKnown RBP22.76■■□□□ 1.23
VPS28-205ENST00000526204 SLMAPQ14BN4 828 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 CLEC16AQ2KHT3 1053 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 CYFIP1Q7L576 1253 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 CCDC105Q8IYK2 499 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 ZDHHC14Q8IZN3 488 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 OTUD6BQ8N6M0 293 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 NSUN6Q8TEA1 469 aaKnown RBP22.76■■□□□ 1.23
VPS28-205ENST00000526204 ATG4CQ96DT6 458 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 CDHR1Q96JP9 859 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 IFT74Q96LB3 600 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 TOPORSQ9NS56 1045 aaPredicted RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms