RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 PRPF3O43395 683 aaKnown RBP12.96□□□□□ -0.33
SDCBP-211ENST00000523441 TBC1D4O60343 1298 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 GDF9O60383 454 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 XYLBO75191 536 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 TGM1P22735 817 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 USP11P51784 963 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 CCT2P78371 535 aaKnown RBP12.96□□□□□ -0.33
SDCBP-211ENST00000523441 NCBP1Q09161 790 aaKnown RBP12.96□□□□□ -0.33
SDCBP-211ENST00000523441 EMC2Q15006 297 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 PABPC1LQ4VXU2 614 aaKnown RBP12.96□□□□□ -0.33
SDCBP-211ENST00000523441 XKR9Q5GH70 373 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 ZNF852Q6ZMS4 543 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 Q6ZUG5 572 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 CNNM3Q8NE01 707 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 CCDC148Q8NFR7 591 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 RDM1Q8NG50 284 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 BRF1Q92994 677 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 CLSTN3Q9BQT9 956 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 FNIP2Q9P278 1114 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 WRAP73Q9P2S5 460 aaPredicted RBP12.96□□□□□ -0.33
SDCBP-211ENST00000523441 FBXW11Q9UKB1 542 aa12.96□□□□□ -0.33
SDCBP-211ENST00000523441 ZFP37Q9Y6Q3 630 aaPredicted RBP12.96□□□□□ -0.33
SDCBP-211ENST00000523441 NOTCH4Q99466 2003 aa12.96□□□□□ -0.34
SDCBP-211ENST00000523441 VWA8A3KMH1 1905 aa12.96□□□□□ -0.34
SDCBP-211ENST00000523441 CCDC196A0A1B0GTZ2 297 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 B4GALT5O43286 388 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 LILRB5O75023 590 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 EFEMP2O95967 443 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 QARSP47897 775 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 CYP4A11Q02928 519 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 SRSF5Q13243 272 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 HSP90AA2PQ14568 343 aaPredicted RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 Q4G0T1 1027 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 AXDND1Q5T1B0 1012 aaPredicted RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 HEATR6Q6AI08 1181 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 FERMT3Q86UX7 667 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 NPAS3Q8IXF0 933 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 CSRNP2Q9H175 543 aa12.95□□□□□ -0.34
SDCBP-211ENST00000523441 NCOA5Q9HCD5 579 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 DNMT3BQ9UBC3 853 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 DDX25Q9UHL0 483 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 MRPS23Q9Y3D9 190 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 PDCD11Q14690 1871 aaKnown RBP12.95□□□□□ -0.34
SDCBP-211ENST00000523441 SF3B1O75533 1304 aaKnown RBP eCLIP12.94□□□□□ -0.34
SDCBP-211ENST00000523441 SLC37A4O43826 429 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 MARCH6O60337 910 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 KIF4AO95239 1232 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 OR1D2P34982 312 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 CREMQ03060 361 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 CTTNQ14247 550 aaKnown RBP12.94□□□□□ -0.34
SDCBP-211ENST00000523441 CCDC6Q16204 474 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 TMEM132AQ24JP5 1023 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 NCAPH2Q6IBW4 605 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 TANGO2Q6ICL3 276 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.94□□□□□ -0.34
SDCBP-211ENST00000523441 HACE1Q8IYU2 909 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 NETO1Q8TDF5 533 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 MBOAT7Q96N66 472 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 MTRQ99707 1265 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 TTPALQ9BTX7 342 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 OSBPL6Q9BZF3 934 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 BRD9Q9H8M2 597 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 RGL1Q9NZL6 768 aa12.94□□□□□ -0.34
SDCBP-211ENST00000523441 MRPS17Q9Y2R5 130 aaKnown RBP12.94□□□□□ -0.34
SDCBP-211ENST00000523441 SLC30A4O14863 429 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 HNRNPA1P09651 372 aaKnown RBP eCLIP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 CEBPBP17676 345 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 ARF4P18085 180 aaPredicted RBP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 LIG1P18858 919 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 YWHABP31946 246 aaKnown RBP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 RFC5P40937 340 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 MAGEA9P43362 315 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 ADCY1Q08828 1119 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 DMWDQ09019 674 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 GRIK3Q13003 919 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 SIM2Q14190 667 aaPredicted RBP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 INF2Q27J81 1249 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 LAIR1Q6GTX8 287 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 MAEAQ7L5Y9 396 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 LNX1Q8TBB1 728 aaPredicted RBP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 ETNPPLQ8TBG4 499 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 TCP11Q8WWU5 503 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 CLDN23Q96B33 292 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 DYDC2Q96IM9 177 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 NELL2Q99435 816 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 LXNQ9BS40 222 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 DHX33Q9H6R0 707 aaKnown RBP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 LMAN1LQ9HAT1 526 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 PRMT8Q9NR22 394 aaPredicted RBP12.93□□□□□ -0.34
SDCBP-211ENST00000523441 SEMA4GQ9NTN9 838 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 GIT1Q9Y2X7 761 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 BAHCC1Q9P281 2608 aa12.93□□□□□ -0.34
SDCBP-211ENST00000523441 A0A087WWV3 80 aa12.92□□□□□ -0.34
SDCBP-211ENST00000523441 CHURC1-FNTBB4DL54 471 aa12.92□□□□□ -0.34
SDCBP-211ENST00000523441 FNTBP49356 437 aa12.92□□□□□ -0.34
SDCBP-211ENST00000523441 ARPP19P56211 112 aa12.92□□□□□ -0.34
SDCBP-211ENST00000523441 SATB1Q01826 763 aa12.92□□□□□ -0.34
SDCBP-211ENST00000523441 COL9A2Q14055 689 aaPredicted RBP12.92□□□□□ -0.34
SDCBP-211ENST00000523441 SLC5A9Q2M3M2 681 aa12.92□□□□□ -0.34
SDCBP-211ENST00000523441 B3GNT9Q6UX72 402 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms