RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 CUEDC2Q9H467 287 aa14.02□□□□□ -0.17
CLCN3-210ENST00000515420 ST6GALNAC4Q9H4F1 302 aa14.02□□□□□ -0.17
CLCN3-210ENST00000515420 TOPORSQ9NS56 1045 aaPredicted RBP14.02□□□□□ -0.17
CLCN3-210ENST00000515420 MIOSQ9NXC5 875 aa14.02□□□□□ -0.17
CLCN3-210ENST00000515420 SNTG2Q9NY99 539 aa14.02□□□□□ -0.17
CLCN3-210ENST00000515420 TFIP11Q9UBB9 837 aaKnown RBP14.02□□□□□ -0.17
CLCN3-210ENST00000515420 SEL1LQ9UBV2 794 aa14.02□□□□□ -0.17
CLCN3-210ENST00000515420 C2orf71A6NGG8 1288 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 TBX10O75333 385 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 CSPG5O95196 566 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 EFEMP2O95967 443 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 PIGRP01833 764 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 THP07101 528 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 GTF2F1P35269 517 aaKnown RBP eCLIP14.01□□□□□ -0.17
CLCN3-210ENST00000515420 STAT6P42226 847 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 YARSP54577 528 aaKnown RBP14.01□□□□□ -0.17
CLCN3-210ENST00000515420 KCNC3Q14003 757 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 TMEM184AQ6ZMB5 413 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 GPR65Q8IYL9 337 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 RNF168Q8IYW5 571 aaPredicted RBP14.01□□□□□ -0.17
CLCN3-210ENST00000515420 MYCT1Q8N699 235 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 SPRYD3Q8NCJ5 442 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.01□□□□□ -0.17
CLCN3-210ENST00000515420 FIZ1Q96SL8 496 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 CCDC94Q9BW85 323 aaPredicted RBP14.01□□□□□ -0.17
CLCN3-210ENST00000515420 IGFLR1Q9H665 355 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 MARCH5Q9NX47 278 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 SSX2IPQ9Y2D8 614 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 USP20Q9Y2K6 914 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 PCDHGC5Q9Y5F6 944 aa14.01□□□□□ -0.17
CLCN3-210ENST00000515420 PDCD11Q14690 1871 aaKnown RBP14.01□□□□□ -0.17
CLCN3-210ENST00000515420 A0A087X0B3 334 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 GRXCR2A6NFK2 248 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 K7ENM7 598 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 PTGESO14684 152 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 GLP2RO95838 553 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 SOD2P04179 222 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 GAP43P17677 238 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 OR1G1P47890 313 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 NDUFV1P49821 464 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 GTF2BQ00403 316 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 MCL1Q07820 350 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 COASYQ13057 564 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 NOLC1Q14978 699 aaKnown RBP eCLIP14□□□□□ -0.17
CLCN3-210ENST00000515420 NAB2Q15742 525 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 KYAT1Q16773 422 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 XKR4Q5GH76 650 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 AXDND1Q5T1B0 1012 aaPredicted RBP14□□□□□ -0.17
CLCN3-210ENST00000515420 FOXD4L5Q5VV16 416 aaPredicted RBP14□□□□□ -0.17
CLCN3-210ENST00000515420 PTCRAQ6ISU1 281 aaPredicted RBP14□□□□□ -0.17
CLCN3-210ENST00000515420 EP400NLQ6ZTU2 488 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 RBM23Q86U06 439 aaKnown RBP14□□□□□ -0.17
CLCN3-210ENST00000515420 FAM178BQ8IXR5 827 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 FOXD4L4Q8WXT5 416 aaPredicted RBP14□□□□□ -0.17
CLCN3-210ENST00000515420 DDX12PQ92771 950 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 HVCN1Q96D96 273 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 MSLNLQ96KJ4 702 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 TCHPQ9BT92 498 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 HERC2P3Q9BVR0 1158 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 COLEC11Q9BWP8 271 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 VN1R3Q9BXE9 311 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 LRRC27Q9C0I9 530 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 KLK14Q9P0G3 267 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 TBX20Q9UMR3 447 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 GDAQ9Y2T3 454 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 ATP6V1DQ9Y5K8 247 aa14□□□□□ -0.17
CLCN3-210ENST00000515420 HIDE1A8MVS5 230 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 H3BQ06 376 aaPredicted RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 LINC01565O15544 149 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 CLDN3O15551 220 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 CXCL14O95715 111 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 SMAD4Q13485 552 aaKnown RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 PTPN14Q15678 1187 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 E2F4Q16254 413 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 ALKAL1Q6UXT8 129 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 MAP4K3Q8IVH8 894 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 SMRP1Q8NCR6 262 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 DNAJC19Q96DA6 116 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 ACAP3Q96P50 834 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 PPP1R10Q96QC0 940 aaKnown RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 UHRF1Q96T88 793 aaPredicted RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 PYM1Q9BRP8 204 aaKnown RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 TNMDQ9H2S6 317 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 MAGEF1Q9HAY2 307 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 OLFML3Q9NRN5 406 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 SLC38A7Q9NVC3 462 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 CLEC1BQ9P126 229 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 CD207Q9UJ71 328 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 RCOR1Q9UKL0 485 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 ADAM28Q9UKQ2 775 aa13.99□□□□□ -0.17
CLCN3-210ENST00000515420 PRG3Q9Y2Y8 225 aaPredicted RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.99□□□□□ -0.17
CLCN3-210ENST00000515420 TCHHQ07283 1943 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 MUC3AQ02505 3323 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 FRMD3A2A2Y4 597 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 MYMKA6NI61 221 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 TMEM189-UBE2V1I3L0A0 370 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 HNRNPDLO14979 420 aaKnown RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 PER2O15055 1255 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms