RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SLIT1O75093 1534 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 MYMKA6NI61 221 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 STK4Q13043 487 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 DRAP1Q14919 205 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 BZW1Q7L1Q6 419 aaKnown RBP13.96□□□□□ -0.17
TCOF1-213ENST00000514442 ERICH1Q86X53 443 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 PARD3BQ8TEW8 1205 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 AGBL1Q96MI9 1066 aa13.96□□□□□ -0.17
TCOF1-213ENST00000514442 FAM187AA6NFU0 413 aa13.96□□□□□ -0.18
TCOF1-213ENST00000514442 PPP1R3GB7ZBB8 358 aa13.96□□□□□ -0.18
TCOF1-213ENST00000514442 DEUP1Q05D60 604 aa13.96□□□□□ -0.18
TCOF1-213ENST00000514442 SYT2Q8N9I0 419 aaPredicted RBP13.96□□□□□ -0.18
TCOF1-213ENST00000514442 ZNF280CQ8ND82 737 aa13.96□□□□□ -0.18
TCOF1-213ENST00000514442 PRMT6Q96LA8 375 aaPredicted RBP13.96□□□□□ -0.18
TCOF1-213ENST00000514442 FAM129AQ9BZQ8 928 aa13.96□□□□□ -0.18
TCOF1-213ENST00000514442 AMACRQ9UHK6 382 aa13.96□□□□□ -0.18
TCOF1-213ENST00000514442 MAGEA13PA6NCF6 341 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 PPP4CP60510 307 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 GFM2Q969S9 779 aaKnown RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 REEP2Q9BRK0 252 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 JPH1Q9HDC5 661 aaPredicted RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 EHD2Q9NZN4 543 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 CNOT8Q9UFF9 292 aaKnown RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ANAPC7Q9UJX3 599 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ZNF711Q9Y462 761 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 RICTORQ6R327 1708 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 BCL9O00512 1426 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ZNF699Q32M78 642 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 KDM4FA0A1W2PPD8 638 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 HNRNPCL1O60812 293 aaKnown RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 OATP04181 439 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 BRAFP15056 766 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 VHLP40337 213 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 BASP1P80723 227 aaKnown RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 PTPAQ15257 358 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 TSEN2Q8NCE0 465 aaKnown RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ADAM22Q9P0K1 906 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.95□□□□□ -0.18
TCOF1-213ENST00000514442 EMSYQ7Z589 1322 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ACADSP16219 412 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 PHKA2P46019 1235 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 PDXDC1Q6P996 788 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ATP2A3Q93084 1043 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 C11orf70Q9BRQ4 267 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 FBXO28Q9NVF7 368 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 FGFR1OP2Q9NVK5 253 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 RHBDL2Q9NX52 303 aa13.95□□□□□ -0.18
TCOF1-213ENST00000514442 ROR2Q01974 943 aaKnown RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 DSTYKQ6XUX3 929 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 SIX6OS1Q8N1H7 587 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 HSPH1Q92598 858 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 DEFB129Q9H1M3 183 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 SEL1LQ9UBV2 794 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ANAPC5Q9UJX4 755 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 INPP5FQ9Y2H2 1132 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 A0A1W2PQJ5 194 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 TTC36A6NLP5 189 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ASAP2O43150 1006 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 TRAPPC3O43617 180 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ACTN1P12814 892 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ZFXP17010 805 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 DARS2Q6PI48 645 aaKnown RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 MCF2LO15068 1137 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 PRPSAP2O60256 369 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ECE1P42892 770 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 THEMIS2Q5TEJ8 643 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 EPM2AIP1Q7L775 607 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ADSSL1Q8N142 457 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 USP38Q8NB14 1042 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 TEX13BQ9BXU2 312 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 RTFDC1Q9BY42 306 aaPredicted RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 NDE1Q9NXR1 346 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 GIPC1O14908 333 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 HAUS5O94927 633 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 AP2B1P63010 937 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 ACER1Q8TDN7 264 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 LPAR1Q92633 364 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 HEMGNQ9BXL5 484 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 TUFT1Q9NNX1 390 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 NGRNQ9NPE2 291 aaKnown RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 PSMA2P25787 234 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 LMNB2Q03252 620 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 TWF2Q6IBS0 349 aaKnown RBP13.94□□□□□ -0.18
TCOF1-213ENST00000514442 NUF2Q9BZD4 464 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 HACL1Q9UJ83 578 aa13.94□□□□□ -0.18
TCOF1-213ENST00000514442 A0A0U1RQJ8 604 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 LIN7AO14910 233 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-213ENST00000514442 ZWINTO95229 277 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 GPC3P51654 580 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 SEMA3FQ13275 785 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 CDKAL1Q5VV42 579 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 PLA2G4FQ68DD2 849 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 KCNV1Q6PIU1 500 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 RHOT2Q8IXI1 618 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 HDAC7Q8WUI4 952 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 TMEM143Q96AN5 459 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-213ENST00000514442 WTIPA6NIX2 430 aaPredicted RBP13.93□□□□□ -0.18
TCOF1-213ENST00000514442 FDX1P10109 184 aa13.93□□□□□ -0.18
TCOF1-213ENST00000514442 MYBP10242 640 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms