RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MTMR10Q9NXD2 777 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 EMSYQ7Z589 1322 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 KRT19P08727 400 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 IRS1P35568 1242 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 DDIT3P35638 169 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 PHKA2P46019 1235 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 KCNA1Q09470 495 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 BMS1Q14692 1282 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 MAPK6Q16659 721 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 SMYD4Q8IYR2 804 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 SAMD3Q8N6K7 520 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 KRI1Q8N9T8 703 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 FSIP1Q8NA03 581 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 SAAL1Q96ER3 474 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 TSPAN18Q96SJ8 248 aa8.59□□□□□ -1.03
LIMCH1-219ENST00000514096 MUC6Q6W4X9 2439 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PRPF6O94906 941 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PRKCBP05771 671 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 KCNQ1P51787 676 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 RESTQ13127 1097 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 ENOX2Q16206 610 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 AMHR2Q16671 573 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 GLB1LQ6UWU2 654 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 TMEM110Q86TL2 294 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 TMEM192Q8IY95 271 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 GLIS3Q8NEA6 775 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 CCDC127Q96BQ5 260 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 MTMR9Q96QG7 549 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 SLC39A2Q9NP94 309 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 INSL6Q9Y581 213 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 ZFHX2Q9C0A1 2572 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 SMIM35A0A1B0GVV1 85 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 LINC01553A4QN01 128 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 KLHL33A6NCF5 533 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 DKC1O60832 514 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 DARSP14868 501 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 IGFBP6P24592 240 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 NDUFV1P49821 464 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 KRT85P78386 507 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 TAP1Q03518 808 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 STRN3Q13033 797 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PPP2R5CQ13362 524 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 ZNF280BQ86YH2 543 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 FAM178BQ8IXR5 827 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 CCAR2Q8N163 923 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 SLC43A3Q8NBI5 491 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 TMEM169Q96HH4 297 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 RAD9AQ99638 391 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 HSD17B14Q9BPX1 270 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PAAF1Q9BRP4 392 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 ADPGKQ9BRR6 497 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 NUB1Q9Y5A7 615 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PCDHB2Q9Y5E7 798 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PRPF40AO75400 957 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 DGAT1O75907 488 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 ARF4P18085 180 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 LIG4P49917 911 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 SPIRE1Q08AE8 756 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 IFRD2Q12894 506 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PLEKHG4Q58EX7 1191 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 LINC01599Q8WXQ3 324 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 RPGRIP1Q96KN7 1286 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 REEP2Q9BRK0 252 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 PLEKHA4Q9H4M7 779 aa8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 MRPL42Q9Y6G3 142 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-219ENST00000514096 LCTP09848 1927 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 STK25O00506 426 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 PYGLP06737 847 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 NRIP1P48552 1158 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SLC26A2P50443 739 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 CYP2J2P51589 502 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 CRYBB1P53674 252 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 TPD52L1Q16890 204 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 EPC2Q52LR7 807 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 TMEM173Q86WV6 379 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SFR1Q86XK3 245 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 LARP4BQ92615 738 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 GUCD1Q96NT3 240 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 NAP1L4Q99733 375 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SERTAD1Q9UHV2 236 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 IGSF9BQ9UPX0 1349 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 ABHD14A-ACY1A0A1B0GW23 586 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SMAPO00193 183 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 CCDC175P0C221 793 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 NAT2P11245 290 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 ITGA4P13612 1032 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 RPA1P27694 616 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 TFDP1Q14186 410 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 TRIM71Q2Q1W2 868 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 ADALQ6DHV7 355 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 RINT1Q6NUQ1 792 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SLC24A5Q71RS6 500 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 NIPA1Q7RTP0 329 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 BRAPQ7Z569 592 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 POF1BQ8WVV4 589 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 VWCEQ96DN2 955 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 SH3GL3Q99963 347 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 FAM105AQ9NUU6 356 aa8.57□□□□□ -1.04
LIMCH1-219ENST00000514096 USP25Q9UHP3 1055 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms