RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PCDHGA3Q9Y5H0 932 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PODXLO00592 558 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 RPS6KA4O75676 772 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 TOMM70O94826 608 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 FOXD4Q12950 439 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 KIF19Q2TAC6 998 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 DARS2Q6PI48 645 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 FRA10AC1Q70Z53 315 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PBXIP1Q96AQ6 731 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PHF21AQ96BD5 680 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 GOLPH3LQ9H4A5 285 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 NOL6Q9H6R4 1146 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 DAPK2Q9UIK4 370 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 METP08581 1390 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 TRIM49BA6NDI0 452 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 LAD1O00515 517 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PJA2O43164 708 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 HNRNPRO43390 633 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 BFSP2Q13515 415 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP1A4Q13733 1029 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 PROSER3Q2NL68 480 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 KLHL12Q53G59 568 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 METTL23Q86XA0 190 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 SFR1Q86XK3 245 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 SKA2Q8WVK7 121 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 OSBP2Q969R2 916 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 FAM149B1Q96BN6 582 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 MIEF2Q96C03 454 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 MED10Q9BTT4 135 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 SAYSD1Q9NPB0 183 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 ZSWIM5Q9P217 1185 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 SLC13A4Q9UKG4 626 aa9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 SOS2Q07890 1332 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-218ENST00000513024 TNPO2O14787 897 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 TEX33O43247 280 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 HMOX2P30519 316 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 HSPA13P48723 471 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 PPIDQ08752 370 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 DMC1Q14565 340 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 DOK7Q18PE1 504 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ARMC3Q5W041 872 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 TRPM8Q7Z2W7 1104 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 STX12Q86Y82 276 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP11CQ8NB49 1132 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ZNF555Q8NEP9 628 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 PARD3BQ8TEW8 1205 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ZBTB18Q99592 522 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP6V1HQ9UI12 483 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 INPP5FQ9Y2H2 1132 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ABL1P00519 1130 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 PECAM1P16284 738 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 MECOMQ03112 1051 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 MTF1Q14872 753 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ARMCX4Q5H9R4 360 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 BRINP3Q76B58 766 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 SEPT1Q8WYJ6 367 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 TEKT3Q9BXF9 490 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ASPSCR1Q9BZE9 553 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 DHX36Q9H2U1 1008 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 PIDD1Q9HB75 910 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 EXOSC4Q9NPD3 245 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 PRDM5Q9NQX1 630 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ZNF277Q9NRM2 450 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 STK17AQ9UEE5 414 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 USP15Q9Y4E8 981 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 ALKQ9UM73 1620 aa9.21□□□□□ -0.93
LIMCH1-218ENST00000513024 AP3B1O00203 1094 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 PRKAB2O43741 272 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 POLR2MP0CAP2 368 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 XPAP23025 273 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 EFTUD2Q15029 972 aaKnown RBP eCLIP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 CERKLQ49MI3 558 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 SDE2Q6IQ49 451 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 TAGAPQ8N103 731 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 SH2D3CQ8N5H7 860 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 KCNK16Q96T55 309 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 WWP1Q9H0M0 922 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 LMCD1Q9NZU5 365 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 DSEQ9UL01 958 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 ANO9A1A5B4 782 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 EIF2S1P05198 315 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 ZCCHC18P0CG32 403 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 KITP10721 976 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 CDH2P19022 906 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 FCHO2Q0JRZ9 810 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 TSTA3Q13630 321 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 TAF1CQ15572 869 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 TUBA3EQ6PEY2 450 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 CROCCP3Q8IVE0 287 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 SUN5Q8TC36 379 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 RIN2Q8WYP3 895 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 CSRNP1Q96S65 589 aa9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 FHDC1Q9C0D6 1143 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 PAIP1Q9H074 479 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 PUS7LQ9H0K6 701 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-218ENST00000513024 SERPINH1P50454 418 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 IRAK1P51617 712 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 GFPT1Q06210 699 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 DNAJC24Q6P3W2 148 aa9.2□□□□□ -0.94
LIMCH1-218ENST00000513024 ANKRD7Q92527 254 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms