RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 TMEM132AQ24JP5 1023 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 LILRA6Q6PI73 481 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 C15orf39Q6ZRI6 1047 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 SPATA31D4Q6ZUB0 917 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 PALB2Q86YC2 1186 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 SUGP1Q8IWZ8 645 aaKnown RBP13.79□□□□□ -0.2
PDPN-208ENST00000509009 UBALD2Q8IYN6 164 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 TDRD5Q8NAT2 981 aaKnown RBP13.79□□□□□ -0.2
PDPN-208ENST00000509009 HDAC7Q8WUI4 952 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 PAAF1Q9BRP4 392 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 KIFC3Q9BVG8 833 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 MAN1C1Q9NR34 630 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.79□□□□□ -0.2
PDPN-208ENST00000509009 FNIP2Q9P278 1114 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 CACNG4Q9UBN1 327 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 DNM3Q9UQ16 869 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 CACNA1HO95180 2353 aa13.79□□□□□ -0.2
PDPN-208ENST00000509009 PP2D1A8MPX8 630 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 E9PMD0 336 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 K7ERI5 159 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 LAD1O00515 517 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 RECQL4O94761 1208 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 GLUD1P00367 558 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 PDGFBP01127 241 aaPredicted RBP13.78□□□□□ -0.2
PDPN-208ENST00000509009 THP07101 528 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 MYBP10242 640 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 AVPR2P30518 371 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 PRPHP41219 470 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 HSP90AA2PQ14568 343 aaPredicted RBP13.78□□□□□ -0.2
PDPN-208ENST00000509009 NAB2Q15742 525 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 CYP26C1Q6V0L0 522 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 DTHD1Q6ZMT9 781 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 OTOP3Q7RTS5 596 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 ALYREFQ86V81 257 aaKnown RBP13.78□□□□□ -0.2
PDPN-208ENST00000509009 DAW1Q8N136 415 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 SNX29Q8TEQ0 813 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 RIN2Q8WYP3 895 aaPredicted RBP13.78□□□□□ -0.2
PDPN-208ENST00000509009 TMX3Q96JJ7 454 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 ADPGKQ9BRR6 497 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 MMTAG2Q9BU76 263 aaKnown RBP13.78□□□□□ -0.2
PDPN-208ENST00000509009 RHOBTB2Q9BYZ6 727 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 RAB34Q9BZG1 259 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 SMOC2Q9H3U7 446 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.78□□□□□ -0.2
PDPN-208ENST00000509009 DAXXQ9UER7 740 aaPredicted RBP13.78□□□□□ -0.2
PDPN-208ENST00000509009 DPP7Q9UHL4 492 aa13.78□□□□□ -0.2
PDPN-208ENST00000509009 CASTOR2A6NHX0 329 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 ST18O60284 1047 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 RFPL2O75678 378 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 PAPLNO95428 1278 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 RPL17P18621 184 aaKnown RBP13.77□□□□□ -0.21
PDPN-208ENST00000509009 VCPP55072 806 aaKnown RBP13.77□□□□□ -0.21
PDPN-208ENST00000509009 MTMR3Q13615 1198 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 ATF7IP2Q5U623 682 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 KRT79Q5XKE5 535 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 MCTP1Q6DN14 999 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 CCDC149Q6ZUS6 474 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 KCNK18Q7Z418 384 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 PRSS33Q8NF86 280 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 ZNF707Q96C28 371 aaPredicted RBP13.77□□□□□ -0.21
PDPN-208ENST00000509009 ACSF2Q96CM8 615 aaPredicted RBP13.77□□□□□ -0.21
PDPN-208ENST00000509009 PLEKHA4Q9H4M7 779 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 WDR6Q9NNW5 1121 aaKnown RBP13.77□□□□□ -0.21
PDPN-208ENST00000509009 GDAQ9Y2T3 454 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 KIF3AQ9Y496 699 aa13.77□□□□□ -0.21
PDPN-208ENST00000509009 CCDC169A6NNP5 214 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 TGM5O43548 720 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 CD2BP2O95400 341 aaKnown RBP13.76□□□□□ -0.21
PDPN-208ENST00000509009 IGFBP6P24592 240 aaPredicted RBP13.76□□□□□ -0.21
PDPN-208ENST00000509009 NPTX2P47972 431 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 PEX3P56589 373 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 DCAF4L1Q3SXM0 396 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 RTP2Q5QGT7 225 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 FAM171A1Q5VUB5 890 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 RINT1Q6NUQ1 792 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 ELMSAN1Q6PJG2 1045 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 PRSS55Q6UWB4 352 aaPredicted RBP13.76□□□□□ -0.21
PDPN-208ENST00000509009 C1orf186Q6ZWK4 172 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 GLYCTKQ8IVS8 523 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 ACO2Q99798 780 aaKnown RBP13.76□□□□□ -0.21
PDPN-208ENST00000509009 PRRX2Q99811 253 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 TTPALQ9BTX7 342 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 NT5C3AQ9H0P0 336 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 TMEM134Q9H6X4 195 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 TNFSF13BQ9Y275 285 aa13.76□□□□□ -0.21
PDPN-208ENST00000509009 SF3B1O75533 1304 aaKnown RBP eCLIP13.75□□□□□ -0.21
PDPN-208ENST00000509009 SFI1A8K8P3 1242 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 N4BP1O75113 896 aaKnown RBP13.75□□□□□ -0.21
PDPN-208ENST00000509009 HIP1RO75146 1068 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 KIF4AO95239 1232 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 ATP2C1P98194 919 aaPredicted RBP13.75□□□□□ -0.21
PDPN-208ENST00000509009 TCF15Q12870 199 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 MAPK7Q13164 816 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 RILPL1Q5EBL4 403 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 LNX1Q8TBB1 728 aaPredicted RBP13.75□□□□□ -0.21
PDPN-208ENST00000509009 HASPINQ8TF76 798 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 SMG7Q92540 1137 aaKnown RBP13.75□□□□□ -0.21
PDPN-208ENST00000509009 PNMA5Q96PV4 448 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 CLSTN3Q9BQT9 956 aa13.75□□□□□ -0.21
PDPN-208ENST00000509009 NTPCRQ9BSD7 190 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms