RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 LZTS1Q9Y250 596 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PCDHGC5Q9Y5F6 944 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PCDHA1Q9Y5I3 950 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 FMN2Q9NZ56 1722 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 COL1A1P02452 1464 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 TCF20Q9UGU0 1960 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 MARF1Q9Y4F3 1742 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 N4BP2Q86UW6 1770 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 C4orf47A7E2U8 309 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 FOXN3O00409 490 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 PRRG1O14668 218 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RGS20O76081 388 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 RPLP2P05387 115 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 NAT2P11245 290 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ACTN2P35609 894 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 COPB1P53618 953 aaKnown RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 CCDC15Q0P6D6 951 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 NCAPHQ15003 741 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 PPM1LQ5SGD2 360 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 C6orf118Q5T5N4 469 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 C20orf194Q5TEA3 1177 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 LBX2Q6XYB7 198 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 TMEM179Q6ZVK1 233 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 ARL6IP6Q8N6S5 226 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 LENG1Q96BZ8 264 aaPredicted RBP5.5□□□□□ -1.53
USP54-216ENST00000498143 TMEM87BQ96K49 555 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 WDR37Q9Y2I8 494 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 USH1CQ9Y6N9 552 aa5.5□□□□□ -1.53
USP54-216ENST00000498143 SCN4AP35499 1836 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 TLDC2A0PJX2 215 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 LINC01553A4QN01 128 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 TMEM232C9JQI7 657 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 SLC30A4O14863 429 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 RPS6KA5O75582 802 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 MYL1P05976 194 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 PARP1P09874 1014 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 TOP1P11387 765 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 PTGS2P35354 604 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 METAP2P50579 478 aaKnown RBP eCLIP5.49□□□□□ -1.53
USP54-216ENST00000498143 RING1Q06587 406 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 CUL1Q13616 776 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 PROSER3Q2NL68 480 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 NT5DC4Q86YG4 428 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 GALNT6Q8NCL4 622 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 DEFB124Q8NES8 71 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 NAF1Q96HR8 494 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 NOC4LQ9BVI4 516 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 OSBPL10Q9BXB5 764 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 TRIM8Q9BZR9 551 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 MMADHCQ9H3L0 296 aaPredicted RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 IBTKQ9P2D0 1353 aaPredicted RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 BRWD1Q9NSI6 2320 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 SPTBN1Q01082 2364 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 MAGEB6P1A0A0J9YX57 407 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 POM121CA8CG34 1229 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 H3BQV1 296 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 TIPRLO75663 272 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 KRT14P02533 472 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 APOEP02649 317 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 FAM163BP0C2L3 166 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 HARSP12081 509 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 MARCKSP29966 332 aaPredicted RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 LONP1P36776 959 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 RFC5P40937 340 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 NBL1P41271 181 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 UBXN1Q04323 297 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 LMAN2Q12907 356 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 FAM133BQ5BKY9 247 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 NOL9Q5SY16 702 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 TPRG1Q6ZUI0 275 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 USP53Q70EK8 1073 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 JAMLQ86YT9 394 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 C17orf53Q8N3J3 647 aaPredicted RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 FBXO18Q8NFZ0 1043 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 RFWD2Q8NHY2 731 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 FAM81AQ8TBF8 368 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 LARSQ9P2J5 1176 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 ZMAT5Q9UDW3 170 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 CAPN11Q9UMQ6 739 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 STK38LQ9Y2H1 464 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 PCDHGA2Q9Y5H1 932 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 MON2Q7Z3U7 1717 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 SYCE1LA8MT33 242 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 AP3B1O00203 1094 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 P4HBP07237 508 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 WEE2P0C1S8 567 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 AOC1P19801 751 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 PCK1P35558 622 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 TUBB4BP68371 445 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 CFHR1Q03591 330 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 PTGDRQ13258 359 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 GIT2Q14161 759 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 PPP1R7Q15435 360 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 STPG1Q5TH74 334 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 CACNA2D4Q7Z3S7 1137 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 RELL1Q8IUW5 271 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 RBM12BQ8IXT5 1001 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 DACT3Q96B18 629 aaPredicted RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 GPRC5CQ9NQ84 441 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 ANLNQ9NQW6 1124 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms