RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 FAM84BQ96KN1 310 aaPredicted RBP7.95□□□□□ -1.14
VIM-207ENST00000495528 SYT3Q9BQG1 590 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 PUS3Q9BZE2 481 aaKnown RBP7.95□□□□□ -1.14
VIM-207ENST00000495528 TMEM39BQ9GZU3 492 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 SMURF1Q9HCE7 757 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 CNNM1Q9NRU3 951 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 PLAAQ9Y263 795 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 IRAK3Q9Y616 596 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 FANCIQ9NVI1 1328 aa7.95□□□□□ -1.14
VIM-207ENST00000495528 CCL15-CCL14A0A0B4J2E2 113 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 ZNF561-AS1K7EIQ3 104 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 GRM8O00222 908 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 KPNA6O60684 536 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 HIBADHP31937 336 aaKnown RBP7.94□□□□□ -1.14
VIM-207ENST00000495528 FLT3P36888 993 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 TNFAIP1Q13829 316 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 VGLL4Q14135 290 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 UBE4AQ14139 1066 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 SSPNQ14714 243 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 CCL15Q16663 113 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 TMEM177Q53S58 311 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 CDCA2Q69YH5 1023 aaPredicted RBP7.94□□□□□ -1.14
VIM-207ENST00000495528 OVCH1Q7RTY7 1134 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.94□□□□□ -1.14
VIM-207ENST00000495528 MIB1Q86YT6 1006 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 FAM126BQ8IXS8 530 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 FAM43AQ8N2R8 423 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.94□□□□□ -1.14
VIM-207ENST00000495528 SMARCC2Q8TAQ2 1214 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 ZNF333Q96JL9 665 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 SMG5Q9UPR3 1016 aaKnown RBP7.94□□□□□ -1.14
VIM-207ENST00000495528 NUB1Q9Y5A7 615 aa7.94□□□□□ -1.14
VIM-207ENST00000495528 MYH3P11055 1940 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 KIAA0100Q14667 2235 aaKnown RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 MAN2B1O00754 1011 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 KRT37O76014 449 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 C8AP07357 584 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 C8BP07358 591 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 MED14OSP0DP75 135 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 MYCLP1P12525 358 aaPredicted RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 PI3P19957 117 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 RAP1GAPP47736 663 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 CACNB3P54284 484 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 CACNB2Q08289 660 aaPredicted RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 EGFLAMQ63HQ2 1017 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 STK32CQ86UX6 486 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 TRIM48Q8IWZ4 208 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 PANK1Q8TE04 598 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 TOE1Q96GM8 510 aaKnown RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 KAZALD1Q96I82 304 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 SUCLG2Q96I99 432 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 SIGLEC10Q96LC7 697 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 TARS2Q9BW92 718 aaKnown RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 ARHGAP39Q9C0H5 1083 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 RNF38Q9H0F5 515 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 INTS7Q9NVH2 962 aaKnown RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 C9orf78Q9NZ63 289 aaPredicted RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 DTLQ9NZJ0 730 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 CNOT6Q9ULM6 557 aaKnown RBP7.93□□□□□ -1.14
VIM-207ENST00000495528 SRPK3Q9UPE1 567 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 RIPOR2Q9Y4F9 1068 aa7.93□□□□□ -1.14
VIM-207ENST00000495528 MKI67P46013 3256 aaKnown RBP7.92□□□□□ -1.14
VIM-207ENST00000495528 NPIPB6E9PJ23 425 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 SCDO00767 359 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 FXR1P51114 621 aaKnown RBP eCLIP7.92□□□□□ -1.14
VIM-207ENST00000495528 LACTBP83111 547 aaPredicted RBP7.92□□□□□ -1.14
VIM-207ENST00000495528 CHAF1AQ13111 956 aaPredicted RBP7.92□□□□□ -1.14
VIM-207ENST00000495528 ARHGEF6Q15052 776 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 SLC4A8Q2Y0W8 1093 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 SLC9C1Q4G0N8 1177 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 TM4SF20Q53R12 229 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 CPZQ66K79 652 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 ZC3H18Q86VM9 953 aaKnown RBP7.92□□□□□ -1.14
VIM-207ENST00000495528 WDR63Q8IWG1 891 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 TMEFF1Q8IYR6 380 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 ZKSCAN4Q969J2 545 aaPredicted RBP7.92□□□□□ -1.14
VIM-207ENST00000495528 RIC8BQ9NVN3 520 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 KCTD3Q9Y597 815 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 ATP23Q9Y6H3 246 aa7.92□□□□□ -1.14
VIM-207ENST00000495528 HTTP42858 3142 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 BTBD19C9JJ37 291 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 TLR2O60603 784 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 ALDH1L1O75891 902 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 NPTXRO95502 500 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 TSPAN15O95858 294 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 LRG1P02750 347 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 NBPF7P0C2Y1 421 aaPredicted RBP7.91□□□□□ -1.14
VIM-207ENST00000495528 IGFBP6P24592 240 aaPredicted RBP7.91□□□□□ -1.14
VIM-207ENST00000495528 PCBP1Q15365 356 aaKnown RBP eCLIP7.91□□□□□ -1.143e-21■■□□□ 13.3
VIM-207ENST00000495528 CR1LQ2VPA4 569 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 PAN2Q504Q3 1202 aaKnown RBP7.91□□□□□ -1.14
VIM-207ENST00000495528 LRRC24Q50LG9 513 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 BTBD8Q5XKL5 378 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 FSTL4Q6MZW2 842 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 SLC4A10Q6U841 1118 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 NLGN4XQ8N0W4 816 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 CPA5Q8WXQ8 436 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 DDX1Q92499 740 aaKnown RBP7.91□□□□□ -1.14
VIM-207ENST00000495528 CABP5Q9NP86 173 aa7.91□□□□□ -1.14
VIM-207ENST00000495528 RBPJLQ9UBG7 517 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms