RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 A0A1W2PRG0 241 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 MPHOSPH10O00566 681 aaKnown RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 PLD2O14939 933 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 RAB11FIP3O75154 756 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 THBDP07204 575 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 C6orf222P0C671 652 aaPredicted RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 POU3F3P20264 500 aaPredicted RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 GUCY1A2P33402 732 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 SHMT1P34896 483 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 ADCYAP1R1P41586 468 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 USP14P54578 494 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 RTP1P59025 263 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 DUSP4Q13115 394 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 PLS1Q14651 629 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 COG2Q14746 738 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 SF1Q15637 639 aaKnown RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 C9orf50Q5SZB4 431 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 SLC35F1Q5T1Q4 408 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 ACBD5Q5T8D3 534 aaPredicted RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 ZKSCAN2Q63HK3 967 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 E4F1Q66K89 784 aaPredicted RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 SLC39A5Q6ZMH5 540 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 ARRDC4Q8NCT1 418 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 LPAR1Q92633 364 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 BADQ92934 168 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 C1orf159Q96HA4 380 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 C12orf42Q96LP6 360 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 PTCHD1Q96NR3 888 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 CDX2Q99626 313 aaPredicted RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 MOV10L1Q9BXT6 1211 aaKnown RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 KIAA1683Q9H0B3 1180 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 HOXC10Q9NYD6 342 aa6.2□□□□□ -1.42
PTCD3-219ENST00000494323 ZNFX1Q9P2E3 1918 aaKnown RBP6.2□□□□□ -1.42
PTCD3-219ENST00000494323 TRIM43BA6NCK2 446 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 DNM1LO00429 736 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 STRNO43815 780 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 HOXC6P09630 235 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 CYP2D6P10635 497 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 PAMP19021 973 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 IBSPP21815 317 aaPredicted RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 ADORA2AP29274 412 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 CYP4F3Q08477 520 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 MAP3K12Q12852 859 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 GRB14Q14449 540 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 TESK1Q15569 626 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 FNDC3BQ53EP0 1204 aaKnown RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 TRIM61Q5EBN2 209 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 KIAA1755Q5JYT7 1200 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 SLC9C2Q5TAH2 1124 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 FAM109BQ6ICB4 259 aaPredicted RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 IQCEQ6IPM2 695 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 LBX2Q6XYB7 198 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 AACSQ86V21 672 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 DHX37Q8IY37 1157 aaKnown RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 SPICE1Q8N0Z3 855 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 POU5F2Q8N7G0 328 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 KREMEN2Q8NCW0 462 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 FRS2Q8WU20 508 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 TRIM43Q96BQ3 446 aaPredicted RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 DYNLL2Q96FJ2 89 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 MRPL4Q9BYD3 311 aaKnown RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 FAM126AQ9BYI3 521 aaPredicted RBP6.19□□□□□ -1.42
PTCD3-219ENST00000494323 ERVK13-1Q9NX77 482 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 MCM9Q9NXL9 1143 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 SLAMF8Q9P0V8 285 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 TNFRSF10DQ9UBN6 386 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 TMEM59LQ9UK28 342 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 EXOC6BQ9Y2D4 811 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 UNC80Q8N2C7 3258 aa6.19□□□□□ -1.42
PTCD3-219ENST00000494323 NPHP3-ACAD11A0A0J9YXS1 232 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 KBTBD13C9JR72 458 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 SMIM22K7EJ46 135 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 MEFVO15553 781 aaPredicted RBP6.18□□□□□ -1.42
PTCD3-219ENST00000494323 MSCO60682 206 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 PGK2P07205 417 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 CYBAP13498 195 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 PLS3P13797 630 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 ITGB8P26012 769 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 STAT3P40763 770 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 KIR2DL1P43626 348 aaPredicted RBP6.18□□□□□ -1.42
PTCD3-219ENST00000494323 KIR2DL2P43627 348 aaPredicted RBP6.18□□□□□ -1.42
PTCD3-219ENST00000494323 TLE2Q04725 743 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 KCNAB2Q13303 367 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 TRIM60Q495X7 471 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 HLA-DQA1Q5Y7H0 255 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 ZPBP2Q6X784 338 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 SIAH1Q8IUQ4 282 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 ITPRIPQ8IWB1 547 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 PPIL6Q8IXY8 311 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 SLC44A5Q8NCS7 719 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 SDR42E1Q8WUS8 393 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 STAG1Q8WVM7 1258 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 LINC01599Q8WXQ3 324 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 MAP6Q96JE9 813 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 MMP19Q99542 508 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 RIOK1Q9BRS2 568 aaKnown RBP6.18□□□□□ -1.42
PTCD3-219ENST00000494323 SPATC1LQ9H0A9 340 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 IL1RAPL2Q9NP60 686 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 GPRC5CQ9NQ84 441 aa6.18□□□□□ -1.42
PTCD3-219ENST00000494323 FOCADQ5VW36 1801 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms