RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ATP2A2P16615 1042 aaKnown RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CROCCP2Q86T23 111 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZBTB8OSQ8IWT0 167 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FUKQ8N0W3 1084 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZSWIM2Q8NEG5 633 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PARD3BQ8TEW8 1205 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZBTB45Q96K62 511 aaPredicted RBP11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KCNMB3Q9NPA1 279 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NOD1Q9Y239 953 aa11.48□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NUP188Q5SRE5 1749 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LAMB4A4D0S4 1761 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQC6 194 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DKC1O60832 514 aaKnown RBP eCLIP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 OPHN1O60890 802 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FTLP02792 175 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MMEP08473 750 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SKIP12755 728 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FMO5P49326 533 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PAPOLAP51003 745 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SLC12A3P55017 1021 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SCYL2Q6P3W7 929 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPATA20Q8TB22 786 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 KIFAP3Q92845 792 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 C11orf70Q9BRQ4 267 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DDX23Q9BUQ8 820 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ADAM33Q9BZ11 813 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TMEM206Q9H813 350 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PXMP2Q9NR77 195 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ABT1Q9ULW3 272 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 XIRP1Q702N8 1843 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ADAMTS7Q9UKP4 1686 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 IGKV6D-41A0A0C4DH26 115 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ZNF233A6NK53 670 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 PDXKO00764 312 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NT5C2P49902 561 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CLCN3P51790 818 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CALCOCO2Q13137 446 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SNRNP35Q16560 246 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LONP2Q86WA8 852 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ETNPPLQ8TBG4 499 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TEKT4Q8WW24 435 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CHMP6Q96FZ7 201 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CEP63Q96MT8 703 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GGT7Q9UJ14 662 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FOXN3O00409 490 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FGGP02679 453 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DESP17661 470 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SCTRP47872 440 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 RARRES1P49788 294 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ADCY2Q08462 1091 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ITGB3BPQ13352 177 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TMEM132BQ14DG7 1078 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SMAD1Q15797 465 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 HP1BP3Q5SSJ5 553 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SPATA24Q86W54 205 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MSL3Q8N5Y2 521 aaKnown RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CPA5Q8WXQ8 436 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 MMP19Q99542 508 aa11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 WRAP73Q9P2S5 460 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.47□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TXNDC9O14530 226 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TBX2Q13207 712 aaPredicted RBP11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TMEM119Q4V9L6 283 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GLE1Q53GS7 698 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 BRDTQ58F21 947 aaPredicted RBP11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SEL1L2Q5TEA6 688 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 THEMIS2Q5TEJ8 643 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 FGD4Q96M96 766 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TUFT1Q9NNX1 390 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 GPRC5DQ9NZD1 345 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DDX20Q9UHI6 824 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DMGDHQ9UI17 866 aaKnown RBP11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 L3MBTL1Q9Y468 752 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 STK24Q9Y6E0 443 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 LTBP4Q8N2S1 1624 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ROBO3Q96MS0 1386 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 NHSL1Q5SYE7 1610 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 M0R2N6 131 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 ATP5DP30049 168 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 CETN2P41208 172 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SH3BGRP55822 239 aaPredicted RBP11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SEPT6Q14141 434 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 SYCP2LQ5T4T6 812 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 WDR59Q6PJI9 974 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 DDX42Q86XP3 938 aaKnown RBP eCLIP11.46□□□□□ -0.572e-6■□□□□ 8.3
MSH5-SAPCD1-207ENST00000493662 B4GALNT2Q8NHY0 566 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 OSGEPQ9NPF4 335 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TELO2Q9Y4R8 837 aa11.46□□□□□ -0.57
MSH5-SAPCD1-207ENST00000493662 TJP1Q07157 1748 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZSCAN5CA6NGD5 496 aaPredicted RBP11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TBX3O15119 743 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FERP16591 822 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CYP2B6P20813 491 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PON1P27169 355 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TCF7P36402 384 aaPredicted RBP11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NSFP46459 744 aaKnown RBP11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLCO1A2P46721 670 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NPTX2P47972 431 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 JAK3P52333 1124 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms