RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 MCM7P33993 719 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 EFNA5P52803 228 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 TUSC3Q13454 348 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 DCAF4L1Q3SXM0 396 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 KIAA0319Q5VV43 1072 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 SIX5Q8N196 739 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 NECAB1Q8N987 351 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 FAM184AQ8NB25 1140 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 TNFRSF25Q93038 417 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 C8orf76Q96K31 380 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 POLR3CQ9BUI4 534 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-213ENST00000493475 CHST7Q9NS84 486 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 GJB4Q9NTQ9 266 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 FAM86C1Q9NVL1 165 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 WNT16Q9UBV4 365 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 PCDHB8Q9UN66 801 aa12.79□□□□□ -0.36
COL6A3-213ENST00000493475 ZFHX2Q9C0A1 2572 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 PROB1E7EW31 1015 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 ZBTB39O15060 712 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 TRAPPC3O43617 180 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 B4GALT3O60512 393 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 HNRNPA1P09651 372 aaKnown RBP eCLIP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 OR52Z1P0C646 297 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 AOC1P19801 751 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 AKAP5P24588 427 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 NAMPTP43490 491 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 RBM25P49756 843 aaKnown RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 AFF1P51825 1210 aaKnown RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 HMGN5P82970 282 aaKnown RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 ME3Q16798 604 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 FAM187BQ17R55 369 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 EARS2Q5JPH6 523 aaKnown RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 ERICH6BQ5W0A0 696 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 KANK3Q6NY19 840 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 MAEAQ7L5Y9 396 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 PALB2Q86YC2 1186 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 TMEM105Q8N8V8 129 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 NSUN7Q8NE18 718 aaKnown RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 KIFAP3Q92845 792 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 NKD2Q969F2 451 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 SHDQ96IW2 340 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 MTMR9Q96QG7 549 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 TTPALQ9BTX7 342 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 TOPORSQ9NS56 1045 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-213ENST00000493475 EPS15L1Q9UBC2 864 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 KIF3AQ9Y496 699 aa12.78□□□□□ -0.36
COL6A3-213ENST00000493475 FAM205CA6NFA0 338 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 B4GALT5O43286 388 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 TGM5O43548 720 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 PRKCBP05771 671 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 SRFP11831 508 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 FDPSP14324 419 aaKnown RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 LIG1P18858 919 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 RPA1P27694 616 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 NBL1P41271 181 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 TRAPPC10P48553 1259 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 FOSBP53539 338 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 YARSP54577 528 aaKnown RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 FOXK2Q01167 660 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 AMHR2Q16671 573 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 PPM1LQ5SGD2 360 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 CDCA2Q69YH5 1023 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 ZC3H14Q6PJT7 736 aaKnown RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 PADI6Q6TGC4 694 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 RTL10Q7L3V2 364 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 GET4Q7L5D6 327 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 CATSPER3Q86XQ3 398 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 CEP57Q86XR8 500 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 RNF168Q8IYW5 571 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 MARVELD3Q96A59 401 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 UROC1Q96N76 676 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 LLPHQ9BRT6 129 aaKnown RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 PRKD2Q9BZL6 878 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 NT5C3AQ9H0P0 336 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 FOXP1Q9H334 677 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-213ENST00000493475 SEMA4AQ9H3S1 761 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 PPP4R2Q9NY27 417 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 KLK14Q9P0G3 267 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 KCNG1Q9UIX4 513 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 LIMCH1Q9UPQ0 1083 aa12.77□□□□□ -0.37
COL6A3-213ENST00000493475 KMT2EQ8IZD2 1858 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 ACKR2O00590 384 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 ZMYND10O75800 440 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 CFHP08603 1231 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 CYP11B2P19099 503 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 FSHRP23945 695 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 HOXA9P31269 272 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 PSMD5Q16401 504 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 FAM171A1Q5VUB5 890 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 MTSS1LQ765P7 747 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 TAS1R1Q7RTX1 841 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 CCDC105Q8IYK2 499 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 PIK3R5Q8WYR1 880 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 PHOX2BQ99453 314 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 GPR62Q9BZJ7 368 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 FZD8Q9H461 694 aa12.76□□□□□ -0.37
COL6A3-213ENST00000493475 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.76□□□□□ -0.37
COL6A3-213ENST00000493475 CASTOR2A6NHX0 329 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 RFPL2O75678 378 aa12.75□□□□□ -0.37
COL6A3-213ENST00000493475 SPATA31D3P0C874 917 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms