RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 Q6ZVL8 140 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SUGP1Q8IWZ8 645 aaKnown RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 CACNA2D3Q8IZS8 1091 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 FAM9BQ8IZU0 186 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 TRAPPC12Q8WVT3 735 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 DDX11Q96FC9 970 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 DYDC2Q96IM9 177 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 MRGPRX4Q96LA9 322 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 PPM1MQ96MI6 270 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 RMDN3Q96TC7 470 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SOX7Q9BT81 388 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 BRIP1Q9BX63 1249 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 BTBD2Q9BX70 525 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 TMEM120AQ9BXJ8 343 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 DACT1Q9NYF0 836 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 AFF4Q9UHB7 1163 aaKnown RBP5.52□□□□□ -1.53
VPS13A-212ENST00000493341 WASF3Q9UPY6 502 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 SIK3Q9Y2K2 1263 aa5.52□□□□□ -1.53
VPS13A-212ENST00000493341 NUDT19A8MXV4 375 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 SRGAP3O43295 1099 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ZNF500O60304 480 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-212ENST00000493341 TMEM127O75204 238 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 MBD4O95243 580 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 MALP21145 153 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ECHS1P30084 290 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 HOXA10P31260 410 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-212ENST00000493341 TRHRP34981 398 aaPredicted RBP5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ANTXR2P58335 489 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ERVFC1P60507 584 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 SNAPC2Q13487 334 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 DGKDQ16760 1214 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ZACNQ401N2 412 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ABHD15Q6UXT9 468 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 PPP1R3BQ86XI6 285 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 CCDC89Q8N998 374 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 OR10H5Q8NGA6 315 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 SUCLG2Q96I99 432 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 ZC3H10Q96K80 434 aaKnown RBP5.51□□□□□ -1.53
VPS13A-212ENST00000493341 MANSC1Q9H8J5 431 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 OBP2BQ9NPH6 170 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 VPS45Q9NRW7 570 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 DNAI1Q9UI46 699 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 CRYL1Q9Y2S2 319 aa5.51□□□□□ -1.53
VPS13A-212ENST00000493341 MYBBP1AQ9BQG0 1328 aaKnown RBP5.51□□□□□ -1.53
VPS13A-212ENST00000493341 A0A1B0GVC2 190 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 hCG_1984214I3L0E3 225 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 WIPF1O43516 503 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 VEGFAP15692 232 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 FSTP19883 344 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 FGFR2P21802 821 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 PRR5P85299 388 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 SKIDA1Q1XH10 827 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 FLYWCH1Q4VC44 716 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 TMC5Q6UXY8 1006 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 NLRX1Q86UT6 975 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 OR5AN1Q8NGI8 311 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 BRIX1Q8TDN6 353 aaKnown RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 HOXB13Q92826 284 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 MISP3Q96FF7 219 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 MSLNLQ96KJ4 702 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 UHRF1Q96T88 793 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 P2RX7Q99572 595 aaKnown RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 TNFRSF12AQ9NP84 129 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 COL20A1Q9P218 1284 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 PDP2Q9P2J9 529 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 SLC39A10Q9ULF5 831 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 LGALS16A8MUM7 142 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 EYA2O00167 538 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 TRIM38O00635 465 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 CD8BP10966 210 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 GLRBP48167 497 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 RPS16P62249 146 aaKnown RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 IL13RA1P78552 427 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 CD83Q01151 205 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 MAP3K12Q12852 859 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 CNGB1Q14028 1251 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 RAB39AQ14964 217 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 PHF19Q5T6S3 580 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 INTS11Q5TA45 600 aaKnown RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 LIPIQ6XZB0 460 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 ETV3LQ6ZN32 361 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 ZDHHC13Q8IUH4 622 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 TNPO1Q92973 898 aaKnown RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 IQCDQ96DY2 449 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 SEC62Q99442 399 aaKnown RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 HEPHQ9BQS7 1158 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 PDCD2LQ9BRP1 358 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 FAM167BQ9BTA0 163 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 STK33Q9BYT3 514 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 CNTD2Q9H8S5 307 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 IFT80Q9P2H3 777 aaPredicted RBP5.5□□□□□ -1.53
VPS13A-212ENST00000493341 MYO1AQ9UBC5 1043 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 MAN2B2Q9Y2E5 1009 aa5.5□□□□□ -1.53
VPS13A-212ENST00000493341 GOLGA6L3A6NEY3 463 aa5.49□□□□□ -1.53
VPS13A-212ENST00000493341 ACKR2O00590 384 aa5.49□□□□□ -1.53
VPS13A-212ENST00000493341 TIMM44O43615 452 aa5.49□□□□□ -1.53
VPS13A-212ENST00000493341 PHF2O75151 1096 aa5.49□□□□□ -1.53
VPS13A-212ENST00000493341 CNOT4O95628 575 aaKnown RBP5.49□□□□□ -1.53
VPS13A-212ENST00000493341 LY86O95711 162 aa5.49□□□□□ -1.53
VPS13A-212ENST00000493341 AHSGP02765 367 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms