RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 C7orf31Q8N865 590 aa11.13□□□□□ -0.63
HDAC3-210ENST00000490808 RDH13Q8NBN7 331 aa11.13□□□□□ -0.63
HDAC3-210ENST00000490808 PCYT2Q99447 389 aa11.13□□□□□ -0.63
HDAC3-210ENST00000490808 C16orf70Q9BSU1 422 aa11.13□□□□□ -0.63
HDAC3-210ENST00000490808 PCIF1Q9H4Z3 704 aa11.13□□□□□ -0.63
HDAC3-210ENST00000490808 AIPL1Q9NZN9 384 aa11.13□□□□□ -0.63
HDAC3-210ENST00000490808 GFPT2O94808 682 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 CLTBP09497 229 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 UCHL3P15374 230 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 HOXC8P31273 242 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 MCCD1P59942 119 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-210ENST00000490808 GNG11P61952 73 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 TUBB4BP68371 445 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 SNRNP35Q16560 246 aaKnown RBP11.12□□□□□ -0.63
HDAC3-210ENST00000490808 MAPK6Q16659 721 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 KIAA0753Q2KHM9 967 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 NBPF20Q3BBV1 942 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 LRIT3Q3SXY7 679 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 WDR59Q6PJI9 974 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 ZPBP2Q6X784 338 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 C7orf61Q8IZ16 206 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 MYRIPQ8NFW9 859 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 CAGE1Q8TC20 777 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 BAP1Q92560 729 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 KAT2BQ92831 832 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 TMEM143Q96AN5 459 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 FNBP1Q96RU3 617 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 CHP1Q99653 195 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 CRACR2AQ9BSW2 395 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 MRPL4Q9BYD3 311 aaKnown RBP11.12□□□□□ -0.63
HDAC3-210ENST00000490808 SUGCTQ9HAC7 445 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 NLRC4Q9NPP4 1024 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 GTF2IRD1Q9UHL9 959 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 DNAI1Q9UI46 699 aa11.12□□□□□ -0.63
HDAC3-210ENST00000490808 ZMYND8Q9ULU4 1186 aaPredicted RBP11.12□□□□□ -0.63
HDAC3-210ENST00000490808 IGKV6-21A0A0C4DH24 114 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 RNF225M0QZC1 329 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-210ENST00000490808 PITPNM1O00562 1244 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 EXTL3O43909 919 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 CD4P01730 458 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 GLRA2P23416 452 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 MARK3P27448 753 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 MXI1P50539 228 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 AP3M2P53677 418 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 BFSP2Q13515 415 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 KYAT1Q16773 422 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 LRRC26Q2I0M4 334 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 TMEM63BQ5T3F8 832 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 KRT39Q6A163 491 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 SMYD5Q6GMV2 418 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 TAF2Q6P1X5 1199 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 TRIM65Q6PJ69 517 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 SYT10Q6XYQ8 523 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 APBB1IPQ7Z5R6 666 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-210ENST00000490808 RPAINQ86UA6 219 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 FAM126BQ8IXS8 530 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 TDHQ8IZJ6 230 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 PRPF31Q8WWY3 499 aaKnown RBP11.11□□□□□ -0.63
HDAC3-210ENST00000490808 BSNDQ8WZ55 320 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 JAKMIP2Q96AA8 810 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 MFSD14AQ96MC6 490 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 FBXL18Q96ME1 805 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 CEP89Q96ST8 783 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 CBWD1Q9BRT8 395 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 DESI2Q9BSY9 194 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 STK33Q9BYT3 514 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 GANQ9H2C0 597 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 TMEM8AQ9HCN3 771 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 LZTFL1Q9NQ48 299 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 SUCLA2Q9P2R7 463 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-210ENST00000490808 AGO2Q9UKV8 859 aaKnown RBP11.11□□□□□ -0.63
HDAC3-210ENST00000490808 NOD1Q9Y239 953 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 STYXL1Q9Y6J8 313 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 UNC80Q8N2C7 3258 aa11.11□□□□□ -0.63
HDAC3-210ENST00000490808 C17orf102A2RUQ5 167 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 KIAA0355O15063 1070 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 ZC3H11AO75152 810 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDAC3-210ENST00000490808 NOL4O94818 638 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 LCA5LO95447 670 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 SLC9A1P19634 815 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 EIF4A3P38919 411 aaKnown RBP11.1□□□□□ -0.63
HDAC3-210ENST00000490808 PHKA2P46019 1235 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 KIF11P52732 1056 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 VAV2P52735 878 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 MFAP3P55082 362 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 TLE2Q04725 743 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 CYP24A1Q07973 514 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 LAMTOR4Q0VGL1 99 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 PTK7Q13308 1070 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 MTF1Q14872 753 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 IFI16Q16666 785 aaKnown RBP11.1□□□□□ -0.63
HDAC3-210ENST00000490808 TMEM132AQ24JP5 1023 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 WDR44Q5JSH3 913 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 CCDC122Q5T0U0 273 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 ENOSF1Q7L5Y1 443 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 RSPH3Q86UC2 560 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 ASAP3Q8TDY4 903 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 PARD3BQ8TEW8 1205 aa11.1□□□□□ -0.63
HDAC3-210ENST00000490808 ALS2CR12Q96Q35 445 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms