RNA–Protein interactions for RNA: ENST00000489414.5

EXOSC3-206, Transcript of exosome component 3, humanhuman

TSL 4

Gene EXOSC3, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-206ENST00000489414 CFIP05156 583 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 HNRNPA1P09651 372 aaKnown RBP eCLIP8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 MYH7P12883 1935 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 PSMC3P17980 439 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 CTHP32929 405 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 IRX6P78412 446 aaPredicted RBP8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 GFPT1Q06210 699 aaPredicted RBP8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 EXOSC9Q06265 439 aaKnown RBP8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 SLC9C2Q5TAH2 1124 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 ZNF787Q6DD87 383 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 TTBK2Q6IQ55 1244 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 VITQ6UXI7 678 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 FAM228AQ86W67 206 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 DAGLBQ8NCG7 672 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 RNF169Q8NCN4 708 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 BAHD1Q8TBE0 780 aaPredicted RBP8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 MCRS1Q96EZ8 462 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 TMEM176AQ96HP8 235 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 HERC2P3Q9BVR0 1158 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 ZNF532Q9HCE3 1301 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 DNAJB4Q9UDY4 337 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 SLC6A14Q9UN76 642 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 INVSQ9Y283 1065 aa8.67□□□□□ -1.02
EXOSC3-206ENST00000489414 SLC38A8A6NNN8 435 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 SPECC1L-ADORA2AF8WAN1 911 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 ATXN1LP0C7T5 689 aaKnown RBP8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 HOXD12P35452 270 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 IGBP1P78318 339 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 PON2Q15165 354 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 TNNI3KQ59H18 835 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 ERICH1Q86X53 443 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 RNF168Q8IYW5 571 aaPredicted RBP8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 MMP21Q8N119 569 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 NME8Q8N427 588 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 EXD3Q8N9H8 876 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 RSPH1Q8WYR4 309 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 TSC1Q92574 1164 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 MBOAT7Q96N66 472 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 APOL6Q9BWW8 343 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 ZFP14Q9HCL3 533 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 TBC1D13Q9NVG8 400 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 RCAN3Q9UKA8 241 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 PILRBQ9UKJ0 227 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 GINS2Q9Y248 185 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 PCDHA2Q9Y5H9 948 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 FPGT-TNNI3KV9GXZ4 949 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 PTPRDP23468 1912 aa8.66□□□□□ -1.02
EXOSC3-206ENST00000489414 FBN1P35555 2871 aaKnown RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 ATXN2Q99700 1313 aaKnown RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 ARHGAP33O14559 1287 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 ZNF263O14978 683 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 CCL16O15467 120 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 APBB3O95704 486 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 SERPINF2P08697 491 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 POU2F2P09086 479 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 HOXB4P17483 251 aaPredicted RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 MARK3P27448 753 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 HOXA9P31269 272 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 DPP6P42658 865 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 PTGER3P43115 390 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 GLUD2P49448 558 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 RTP5Q14D33 572 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 PABPC1LQ4VXU2 614 aaKnown RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 USP39Q53GS9 565 aaKnown RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 C6orf118Q5T5N4 469 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 CYFIP1Q7L576 1253 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 TAS1R1Q7RTX1 841 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 RALGPS2Q86X27 583 aaPredicted RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 DEPDC1BQ8WUY9 529 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 HCFC1R1Q9NWW0 138 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 DNMT3BQ9UBC3 853 aaKnown RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 ARPP21Q9UBL0 812 aaPredicted RBP8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 FBXW11Q9UKB1 542 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 AK5Q9Y6K8 562 aa8.65□□□□□ -1.02
EXOSC3-206ENST00000489414 A0A0U1RQF3 1178 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 SMIM35A0A1B0GVV1 85 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 RRN3P2A6NIE6 340 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 BHMG1C9JSJ3 638 aaPredicted RBP8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 SRGAP3O43295 1099 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 XYLBO75191 536 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 MBD4O95243 580 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 EFEMP2O95967 443 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 C8BP07358 591 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 KPNA1P52294 538 aaPredicted RBP8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 FOXK1P85037 733 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 DSG1Q02413 1049 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 DUOXA1Q1HG43 343 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 SLC5A9Q2M3M2 681 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 FAM78AQ5JUQ0 283 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 BROXQ5VW32 411 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 STK11IPQ8N1F8 1099 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 CEP76Q8TAP6 659 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 CSGALNACT1Q8TDX6 532 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 DDRGK1Q96HY6 314 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 LGMNQ99538 433 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 PDCD2LQ9BRP1 358 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 ERAP1Q9NZ08 941 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 POLIQ9UNA4 740 aa8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 MRPS23Q9Y3D9 190 aaKnown RBP8.64□□□□□ -1.03
EXOSC3-206ENST00000489414 APCP25054 2843 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms