RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ADCY8P40145 1251 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 ALDH5A1P51649 535 aaPredicted RBP4.96□□□□□ -1.62
PTCD3-216ENST00000487043 MAP2K6P52564 334 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 CACNB3P54284 484 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 DSC2Q02487 901 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 CACNB2Q08289 660 aaPredicted RBP4.96□□□□□ -1.62
PTCD3-216ENST00000487043 SSPNQ14714 243 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 STILQ15468 1287 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 WDR72Q3MJ13 1102 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 C4orf46Q504U0 113 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 PPP4R3AQ6IN85 833 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 XRRA1Q6P2D8 792 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 FAM180AQ6UWF9 173 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 DPP8Q6V1X1 898 aaPredicted RBP4.96□□□□□ -1.62
PTCD3-216ENST00000487043 FAM129CQ86XR2 697 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 RHOT1Q8IXI2 618 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 DRC7Q8IY82 874 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 ENAHQ8N8S7 591 aaPredicted RBP4.96□□□□□ -1.62
PTCD3-216ENST00000487043 KLHDC4Q8TBB5 520 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 RGMAQ96B86 450 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 DYDC2Q96IM9 177 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 TMEM209Q96SK2 561 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 C7orf25Q9BPX7 421 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 SOX7Q9BT81 388 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 ARMT1Q9H993 441 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 GCM1Q9NP62 436 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 SIRT5Q9NXA8 310 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 RTEL1Q9NZ71 1219 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 FNIP2Q9P278 1114 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 DNAI1Q9UI46 699 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 JAG2Q9Y219 1238 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 CFAP20Q9Y6A4 193 aaKnown RBP4.96□□□□□ -1.62
PTCD3-216ENST00000487043 MYO5CQ9NQX4 1742 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 PREX2Q70Z35 1606 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 ABCC5O15440 1437 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 DAPK1P53355 1430 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 KIAA1107Q9UPP5 1409 aa4.96□□□□□ -1.62
PTCD3-216ENST00000487043 MBD5Q9P267 1494 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 DNMT1P26358 1616 aaKnown RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 LRRC14BA6NHZ5 514 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 MGEA5O60502 916 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 TRIM13O60858 407 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 SEC24DO94855 1032 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CYP2C8P10632 490 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 ZKSCAN1P17029 563 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 PI3P19957 117 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 ADSLP30566 484 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 TRAPPC10P48553 1259 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 HNRNPMP52272 730 aaKnown RBP eCLIP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 AGFG1P52594 562 aaKnown RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 NCKAP1LP55160 1127 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 SRSF3P84103 164 aaKnown RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CD69Q07108 199 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 MGAT2Q10469 447 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 MAP3K12Q12852 859 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CHAF1AQ13111 956 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 FAM83BQ5T0W9 1011 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 OLFML2BQ68BL8 750 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 GRAMD4Q6IC98 578 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 SWSAP1Q6NVH7 229 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 OTOP2Q7RTS6 562 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 TTC7BQ86TV6 843 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 IFNL2Q8IZJ0 200 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 GPR156Q8NFN8 814 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 SMARCC2Q8TAQ2 1214 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CPA5Q8WXQ8 436 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 LRTOMTQ8WZ04 291 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 RAB24Q969Q5 203 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CCDC138Q96M89 665 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 POLR3BQ9NW08 1133 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 SAE1Q9UBE0 346 aaPredicted RBP4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CROTQ9UKG9 612 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 PCDHB1Q9Y5F3 818 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 IRAK3Q9Y616 596 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 ARHGAP5Q13017 1502 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 CD109Q6YHK3 1445 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 SETD5Q9C0A6 1442 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 GLI2P10070 1586 aa4.95□□□□□ -1.62
PTCD3-216ENST00000487043 PLEKHH2Q8IVE3 1493 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 ROCK1Q13464 1354 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 FAM171A2A8MVW0 826 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 PRAMEF4O60810 478 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 TMEM127O75204 238 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 TCEA3O75764 348 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 RPLP2P05387 115 aaKnown RBP4.94□□□□□ -1.62
PTCD3-216ENST00000487043 SETSIPP0DME0 302 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 HNRNPLP14866 589 aaKnown RBP eCLIP4.94□□□□□ -1.62
PTCD3-216ENST00000487043 STK3Q13188 491 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 IFIT5Q13325 482 aaKnown RBP4.94□□□□□ -1.62
PTCD3-216ENST00000487043 SEPT2Q15019 361 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 THEMIS2Q5TEJ8 643 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 DBX2Q6ZNG2 339 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 MAEAQ7L5Y9 396 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 PGBD4Q96DM1 585 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 PAWRQ96IZ0 340 aaKnown RBP4.94□□□□□ -1.62
PTCD3-216ENST00000487043 CDK5RAP3Q96JB5 506 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 CLPTM1LQ96KA5 538 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 SIGLEC10Q96LC7 697 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 NT5C1BQ96P26 610 aa4.94□□□□□ -1.62
PTCD3-216ENST00000487043 HAPLN2Q9GZV7 340 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms