RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ARSDP51689 593 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 VCPP55072 806 aaKnown RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 UBE3AQ05086 875 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 LPIN1Q14693 890 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 OCLNQ16625 522 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 PTPN21Q16825 1174 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 UTP14CQ5TAP6 766 aaKnown RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 PDE12Q6L8Q7 609 aaKnown RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 CYFIP1Q7L576 1253 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 ERMP1Q7Z2K6 904 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 KRT77Q7Z794 578 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 ADGRD2Q7Z7M1 963 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 RBM23Q86U06 439 aaKnown RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 TBC1D10CQ8IV04 446 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 LMNTD2Q8IXW0 634 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 KLHL23Q8NBE8 558 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 GIMAP8Q8ND71 665 aaPredicted RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 IL31RAQ8NI17 732 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 CCDC47Q96A33 483 aaKnown RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 ASIC4Q96FT7 647 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 MRFAP1L1Q96HT8 127 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 FAM227BQ96M60 508 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 CDCA3Q99618 268 aaPredicted RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 GPR20Q99678 358 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 UBAC1Q9BSL1 405 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 KRTAP4-6Q9BYQ5 205 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 CXorf56Q9H5V9 222 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 TLR9Q9NR96 1032 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 BARX2Q9UMQ3 279 aaPredicted RBP7.66□□□□□ -1.18
HDAC3-209ENST00000486618 PCDHB12Q9Y5F1 795 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 SQORQ9Y6N5 450 aa7.66□□□□□ -1.18
HDAC3-209ENST00000486618 SPDYE3A6NKU9 549 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 RBAK-RBAKDNI3L0D1 243 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 M0QZ92 97 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 TBX3O15119 743 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 KRT18P05783 430 aaKnown RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 DNAJB1P25685 340 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 DNAJA1P31689 397 aaKnown RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 NEDD4P46934 1319 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 FAM160A1Q05DH4 1040 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 MGAT3Q09327 533 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 PPFIA1Q13136 1202 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 NMIQ13287 307 aaPredicted RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 PPP2R5AQ15172 486 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 FBXO47Q5MNV8 452 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 C20orf194Q5TEA3 1177 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 NLRX1Q86UT6 975 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 ANKRD13BQ86YJ7 626 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 ENAHQ8N8S7 591 aaPredicted RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 TEX19Q8NA77 164 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 TNPO1Q92973 898 aaKnown RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 MTMR8Q96EF0 704 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 RIPOR3Q96MK2 946 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 INPP4AQ96PE3 977 aaPredicted RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 NEK1Q96PY6 1258 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 KRT23Q9C075 422 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 DOCK5Q9H7D0 1870 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 DNAJB12Q9NXW2 375 aaKnown RBP7.65□□□□□ -1.18
HDAC3-209ENST00000486618 ACAD8Q9UKU7 415 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 SMC3Q9UQE7 1217 aa7.65□□□□□ -1.18
HDAC3-209ENST00000486618 C5orf42Q9H799 3197 aa7.65□□□□□ -1.19
HDAC3-209ENST00000486618 PLXNA3P51805 1871 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 SALL3Q9BXA9 1300 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 RRN3P2A6NIE6 340 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 B4E1Z4 1266 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 ADAM23O75077 832 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 GLP2RO95838 553 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 SCG2P13521 617 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 CASQ1P31415 396 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 NBL1P41271 181 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 MRPS6P82932 125 aaKnown RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 MRPS9P82933 396 aaKnown RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 AMPD3Q01432 767 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 SP4Q02446 784 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 GRIK4Q16099 956 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 PAN2Q504Q3 1202 aaKnown RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 HSP90B2PQ58FF3 399 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 COX20Q5RI15 118 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 SPOUT1Q5T280 376 aaKnown RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 IFIT1BQ5T764 474 aaKnown RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 ANKRD45Q5TZF3 282 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 TMEM164Q5U3C3 297 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 DIEXFQ68CQ4 756 aaKnown RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 PPP4R4Q6NUP7 873 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 XRRA1Q6P2D8 792 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 ZNF589Q86UQ0 364 aaPredicted RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 LCA5Q86VQ0 697 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 HOMER1Q86YM7 354 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 UBALD2Q8IYN6 164 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 CHCHD4Q8N4Q1 142 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 ATP8B4Q8TF62 1192 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 DNAJB3Q8WWF6 145 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 SUSD6Q92537 303 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 IFT43Q96FT9 208 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.64□□□□□ -1.19
HDAC3-209ENST00000486618 BCAS3Q9H6U6 928 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 CNNM2Q9H8M5 875 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 ERAP1Q9NZ08 941 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 RTEL1Q9NZ71 1219 aa7.64□□□□□ -1.19
HDAC3-209ENST00000486618 ZSWIM5Q9P217 1185 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms