RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 INPPL1O15357 1258 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 TOM1L1O75674 476 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 GCNT3O95395 438 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 MCF2P10911 925 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 PROZP22891 400 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 GTF2BQ00403 316 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 COASYQ13057 564 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 NOLC1Q14978 699 aaKnown RBP eCLIP16.16■□□□□ 0.18
USP4-212ENST00000486549 ZPBP2Q6X784 338 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 TMEM173Q86WV6 379 aaPredicted RBP16.16■□□□□ 0.18
USP4-212ENST00000486549 CCDC65Q8IXS2 484 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 GRAMD1CQ8IYS0 662 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 TMEM169Q96HH4 297 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 UHRF1Q96T88 793 aaPredicted RBP16.16■□□□□ 0.18
USP4-212ENST00000486549 CCDC94Q9BW85 323 aaPredicted RBP16.16■□□□□ 0.18
USP4-212ENST00000486549 CXCL16Q9H2A7 254 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 BLZF1Q9H2G9 400 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 CIZ1Q9ULV3 898 aaPredicted RBP16.16■□□□□ 0.18
USP4-212ENST00000486549 PRG3Q9Y2Y8 225 aaPredicted RBP16.16■□□□□ 0.18
USP4-212ENST00000486549 PCDHGC5Q9Y5F6 944 aa16.16■□□□□ 0.18
USP4-212ENST00000486549 ZMYM2Q9UBW7 1377 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 FRMD3A2A2Y4 597 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 CLDN3O15551 220 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 ACTN4O43707 911 aaKnown RBP16.15■□□□□ 0.18
USP4-212ENST00000486549 GALTP07902 379 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 SCP2P22307 547 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 IRS1P35568 1242 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 GRM5P41594 1212 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 OR1G1P47890 313 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 NDUFA8P51970 172 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 YARSP54577 528 aaKnown RBP16.15■□□□□ 0.18
USP4-212ENST00000486549 KRT17Q04695 432 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 GRIK3Q13003 919 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 CAMK1Q14012 370 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 PUS10Q3MIT2 529 aaKnown RBP16.15■□□□□ 0.18
USP4-212ENST00000486549 SEZ6Q53EL9 994 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 TCEAL5Q5H9L2 206 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 GLRA4Q5JXX5 417 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 ZNF720Q7Z2F6 126 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 MAP4K3Q8IVH8 894 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 GSTCDQ8NEC7 633 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 MICAL1Q8TDZ2 1067 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 BCL7CQ8WUZ0 217 aaPredicted RBP16.15■□□□□ 0.18
USP4-212ENST00000486549 MRPS27Q92552 414 aaKnown RBP16.15■□□□□ 0.18
USP4-212ENST00000486549 PPP2R3CQ969Q6 453 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 TMEM175Q9BSA9 504 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 FGFBP2Q9BYJ0 223 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 GOLPH3LQ9H4A5 285 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 NSUN3Q9H649 340 aaKnown RBP16.15■□□□□ 0.18
USP4-212ENST00000486549 TLR9Q9NR96 1032 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 HPSEQ9Y251 543 aa16.15■□□□□ 0.18
USP4-212ENST00000486549 A0A1W2PQ27 194 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 A0A1W2PQ64 194 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 A0A1W2PQD8 194 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 GOLGA6L4A6NEF3 574 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 PTGESO14684 152 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 MYBP10242 640 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 BMP1P13497 986 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 ABCD1P33897 745 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 CA8P35219 290 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 SYKP43405 635 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 CASP5P51878 434 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 ERVFC1P60507 584 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 PLCB3Q01970 1234 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 UBE3AQ05086 875 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 PLPP4Q5VZY2 271 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 COLGALT2Q8IYK4 626 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 KCNN1Q92952 543 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 HPS3Q969F9 1004 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 IGSF21Q96ID5 467 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 ACAP3Q96P50 834 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 C7orf25Q9BPX7 421 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 HAPLN2Q9GZV7 340 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 IKZF4Q9H2S9 585 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 ST6GALNAC4Q9H4F1 302 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 ENTPD7Q9NQZ7 604 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 OLFML3Q9NRN5 406 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 CACNG4Q9UBN1 327 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 PUF60Q9UHX1 559 aaKnown RBP16.14■□□□□ 0.17
USP4-212ENST00000486549 FAN1Q9Y2M0 1017 aa16.14■□□□□ 0.17
USP4-212ENST00000486549 TISP43B9A030 160 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 NRP1O14786 923 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 PPP1R37O75864 691 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 PIGRP01833 764 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 ALDH2P05091 517 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 THP07101 528 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 SLFN14P0C7P3 912 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 TFF2Q03403 129 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 MCL1Q07820 350 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 DSC1Q08554 894 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 KCNA1Q09470 495 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 CUL4BQ13620 913 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 SLC39A4Q6P5W5 647 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 RABGGTAQ92696 567 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 HVCN1Q96D96 273 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 PAGE5Q96GU1 130 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 TCF25Q9BQ70 676 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 MSTO1Q9BUK6 570 aa16.13■□□□□ 0.17
USP4-212ENST00000486549 TOPORSQ9NS56 1045 aaPredicted RBP16.13■□□□□ 0.17
USP4-212ENST00000486549 FAM50BQ9Y247 325 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms