RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 HES2Q9Y543 173 aa6.34□□□□□ -1.39
CUX1-208ENST00000485792 OBSL1O75147 1896 aa6.34□□□□□ -1.39
CUX1-208ENST00000485792 COL4A2P08572 1712 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ANAPC1Q9H1A4 1944 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 VPS37CA5D8V6 355 aaPredicted RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 VWA3AA6NCI4 1184 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 GRM6O15303 877 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 FAM189A1O60320 539 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 MARCH6O60337 910 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 GDF9O60383 454 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 BRD1O95696 1058 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 GLP2RO95838 553 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 STAG3L1P0CL83 205 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ARF4P18085 180 aaPredicted RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 PLCG1P19174 1290 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 SFPQP23246 707 aaKnown RBP eCLIP6.33□□□□□ -1.4
CUX1-208ENST00000485792 MARCKSP29966 332 aaPredicted RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 CCT6AP40227 531 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 NAMPTP43490 491 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ZNF131P52739 623 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 PTK2Q05397 1052 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 NFX1Q12986 1120 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 NR1H3Q13133 447 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 GNL2Q13823 731 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 KARSQ15046 597 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 PAN2Q504Q3 1202 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 ZBTB41Q5SVQ8 909 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 KRT79Q5XKE5 535 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ATL3Q6DD88 541 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 MCTP1Q6DN14 999 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 SLC39A4Q6P5W5 647 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 SHC4Q6S5L8 630 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 CD300LGQ6UXG3 332 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 MAEAQ7L5Y9 396 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 BPHLQ86WA6 291 aaPredicted RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 RNF149Q8NC42 400 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ZSWIM2Q8NEG5 633 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 SNX29Q8TEQ0 813 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 CCDC51Q96ER9 411 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 CPB2Q96IY4 423 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ARHGAP9Q9BRR9 750 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 TIPINQ9BVW5 301 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 STRA6Q9BX79 667 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 TMEM117Q9H0C3 514 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 NT5C3AQ9H0P0 336 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 CSRNP2Q9H175 543 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 BHMT2Q9H2M3 363 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 NXF3Q9H4D5 531 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 PTPRHQ9HD43 1115 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 DDX19AQ9NUU7 478 aaKnown RBP6.33□□□□□ -1.4
CUX1-208ENST00000485792 MARCH5Q9NX47 278 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ARHGAP28Q9P2N2 729 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 DNAJB4Q9UDY4 337 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 RWDD3Q9Y3V2 267 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 MYH10P35580 1976 aa6.33□□□□□ -1.4
CUX1-208ENST00000485792 ACKR2O00590 384 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PTGESO14684 152 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 LINC01565O15544 149 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 TRAK2O60296 914 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PPP6R2O75170 966 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 TBX10O75333 385 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 OFD1O75665 1012 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 UPP2O95045 317 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 CSPG5O95196 566 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PAPLNO95428 1278 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 F13A1P00488 732 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 ITGB1P05556 798 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 ZSCAN22P10073 491 aaPredicted RBP6.32□□□□□ -1.4
CUX1-208ENST00000485792 SKIP12755 728 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 NCLP19338 710 aaKnown RBP6.32□□□□□ -1.4
CUX1-208ENST00000485792 PROZP22891 400 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 CASP1P29466 404 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 LTBRP36941 435 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 RAB27AP51159 221 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 CASP5P51878 434 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PLCB3Q01970 1234 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 TFF2Q03403 129 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 DLX2Q07687 328 aaPredicted RBP6.32□□□□□ -1.4
CUX1-208ENST00000485792 KCNC3Q14003 757 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 CTC1Q2NKJ3 1217 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PKDCCQ504Y2 493 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 C4orf48Q5BLP8 95 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 NT5DC1Q5TFE4 455 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 CNNM4Q6P4Q7 775 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 ZNF280BQ86YH2 543 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 FIBCD1Q8N539 461 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 MAFAQ8NHW3 353 aaPredicted RBP6.32□□□□□ -1.4
CUX1-208ENST00000485792 SPPL3Q8TCT6 385 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 ARNTL2Q8WYA1 636 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 KIFAP3Q92845 792 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 MRPL38Q96DV4 380 aaKnown RBP6.32□□□□□ -1.4
CUX1-208ENST00000485792 YME1L1Q96TA2 773 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PAAF1Q9BRP4 392 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 C1QTNF2Q9BXJ5 285 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 LMAN2LQ9H0V9 348 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 GOLPH3LQ9H4A5 285 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 ST6GALNAC4Q9H4F1 302 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 PDZD7Q9H5P4 517 aa6.32□□□□□ -1.4
CUX1-208ENST00000485792 FAM105AQ9NUU6 356 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms