RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 KCNJ1P48048 391 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 RHBDL3P58872 404 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 IL9RQ01113 521 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 KRT17Q04695 432 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 MGAT5Q09328 741 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 RBBP5Q15291 538 aaKnown RBP14.21□□□□□ -0.13
USP40-214ENST00000483519 CGB2Q6NT52 195 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 VSIG1Q86XK7 387 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 C7orf43Q8WVR3 580 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 CD101Q93033 1021 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 ARHGEF10LQ9HCE6 1279 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 AAASQ9NRG9 546 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 CTNNAL1Q9UBT7 734 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 ASIC3Q9UHC3 531 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 ACTL7BQ9Y614 415 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 UBE4BO95155 1302 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 EME2A4GXA9 379 aaPredicted RBP14.21□□□□□ -0.13
USP40-214ENST00000483519 FOXN3O00409 490 aaPredicted RBP14.21□□□□□ -0.13
USP40-214ENST00000483519 HGSO14964 777 aaPredicted RBP14.21□□□□□ -0.13
USP40-214ENST00000483519 THAP12O43422 761 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 AHCYL1O43865 530 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 FESP07332 822 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 MRPS35P82673 323 aaKnown RBP14.21□□□□□ -0.13
USP40-214ENST00000483519 ARHGAP4P98171 946 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 CAV1Q03135 178 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 SIX1Q15475 284 aaPredicted RBP14.21□□□□□ -0.13
USP40-214ENST00000483519 TRIM68Q6AZZ1 485 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 STXBP4Q6ZWJ1 553 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 PIGOQ8TEQ8 1089 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 SLC20A1Q8WUM9 679 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 SNF8Q96H20 258 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 CYP39A1Q9NYL5 469 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 LGALS13Q9UHV8 139 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 TCRBV7S2A1N4TA0A589 114 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 CDH16O75309 829 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 ATP4AP20648 1035 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 MAN1A1P33908 653 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 POLGP54098 1239 aaPredicted RBP14.21□□□□□ -0.14
USP40-214ENST00000483519 BIRC2Q13490 618 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 Q4G0T1 1027 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 RHBDF2Q6PJF5 856 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 SYDE1Q6ZW31 735 aaPredicted RBP14.21□□□□□ -0.14
USP40-214ENST00000483519 MYCT1Q8N699 235 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 SPDYE1Q8NFV5 336 aaPredicted RBP14.21□□□□□ -0.14
USP40-214ENST00000483519 STK32AQ8WU08 396 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 INPP5DQ92835 1189 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 UTP4Q969X6 686 aaKnown RBP14.21□□□□□ -0.14
USP40-214ENST00000483519 FAM20AQ96MK3 541 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 TMEM237Q96Q45 408 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 DNAJC18Q9H819 358 aa14.21□□□□□ -0.14
USP40-214ENST00000483519 LRRD1A4D1F6 860 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 H0YIN7 160 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 TRIM49P0CI25 452 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 TRIM49CP0CI26 452 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 PCK1P35558 622 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 CTCFP49711 727 aaPredicted RBP14.2□□□□□ -0.14
USP40-214ENST00000483519 RWDD2BP57060 319 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 CYP4A11Q02928 519 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 MPP2Q14168 576 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 PHLDB3Q6NSJ2 640 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 CLEC10AQ8IUN9 316 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 CCDC77Q9BR77 488 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 PCDHA1Q9Y5I3 950 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 LTBP1Q14766 1721 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 TAC1P20366 129 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 RASSF2P50749 326 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 CYP2J2P51589 502 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 YARSP54577 528 aaKnown RBP14.2□□□□□ -0.14
USP40-214ENST00000483519 RAD23BP54727 409 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 TSNAXIP1Q2TAA8 658 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 SGO2Q562F6 1265 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 SRRM1Q8IYB3 904 aaKnown RBP14.2□□□□□ -0.14
USP40-214ENST00000483519 RPUSD2Q8IZ73 545 aaKnown RBP14.2□□□□□ -0.14
USP40-214ENST00000483519 ANKRD35Q8N283 1001 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 ANKLE1Q8NAG6 615 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 POLR3CQ9BUI4 534 aaPredicted RBP14.2□□□□□ -0.14
USP40-214ENST00000483519 MYLK2Q9H1R3 596 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.2□□□□□ -0.14
USP40-214ENST00000483519 STARD13Q9Y3M8 1113 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 USH1CQ9Y6N9 552 aa14.2□□□□□ -0.14
USP40-214ENST00000483519 KLRG2A4D1S0 409 aaPredicted RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 MPHOSPH10O00566 681 aaKnown RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 PEX11AO75192 247 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 DCTN3O75935 186 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 ATP6V1C1P21283 382 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 NMT1P30419 496 aaKnown RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 CHKAP35790 457 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 GABPAQ06546 454 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 CETN1Q12798 172 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 BFSP1Q12934 665 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 RINT1Q6NUQ1 792 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 KCTD1Q719H9 257 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 ERP27Q96DN0 273 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 FAM163AQ96GL9 167 aaPredicted RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 LRRC37BQ96QE4 947 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 NKX1-2Q9UD57 310 aaPredicted RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 MAPK13O15264 365 aa14.19□□□□□ -0.14
USP40-214ENST00000483519 SNUPNO95149 360 aaKnown RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 DLATP10515 647 aaKnown RBP14.19□□□□□ -0.14
USP40-214ENST00000483519 ALDH3A1P30838 453 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms