RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 YARSP54577 528 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 BFSP1Q12934 665 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 NFX1Q12986 1120 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 CCDC40Q4G0X9 1142 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 XKR4Q5GH76 650 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 CEP135Q66GS9 1140 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 CRELD2Q6UXH1 353 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 BRSK2Q8IWQ3 736 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 PARD3BQ8TEW8 1205 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 CACTINQ8WUQ7 758 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 ANP32BQ92688 251 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 CNOT6LQ96LI5 555 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 ACAP3Q96P50 834 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 TUBGCP2Q9BSJ2 902 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 TRIM6Q9C030 488 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 TSPYL2Q9H2G4 693 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 FAM124BQ9H5Z6 455 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 AGO3Q9H9G7 860 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 RPF1Q9H9Y2 349 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 GRPEL1Q9HAV7 217 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 SAMSN1Q9NSI8 373 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 FAM105AQ9NUU6 356 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 PIN4Q9Y237 131 aaKnown RBP8.98□□□□□ -0.97
SYNE1-225ENST00000481502 GIT1Q9Y2X7 761 aa8.98□□□□□ -0.97
SYNE1-225ENST00000481502 A0A1B0GTH6 734 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 ABHD14A-ACY1A0A1B0GW23 586 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 A0A1W2PQC6 194 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 B4GALT5O43286 388 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 HOXA2O43364 376 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 NBNO60934 754 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 BAIAP3O94812 1187 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 EDN1P05305 212 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 CTSHP09668 335 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 STAG3L1P0CL83 205 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 GHRP10912 638 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 RAG1P15918 1043 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 CD52P31358 61 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 CYP2J2P51589 502 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 VAMP7P51809 220 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 FANCCQ00597 558 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 CYP24A1Q07973 514 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 PPIGQ13427 754 aaKnown RBP eCLIP8.97□□□□□ -0.97
SYNE1-225ENST00000481502 IKBKEQ14164 716 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 MBTPS1Q14703 1052 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 UBXN11Q5T124 520 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 COL13A1Q5TAT6 717 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-225ENST00000481502 TWF2Q6IBS0 349 aaKnown RBP8.97□□□□□ -0.97
SYNE1-225ENST00000481502 CNKSR3Q6P9H4 555 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 ALKAL1Q6UXT8 129 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-225ENST00000481502 WDR49Q8IV35 697 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 SPDYE1Q8NFV5 336 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-225ENST00000481502 PPP1R13LQ8WUF5 828 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 MRFAP1L1Q96HT8 127 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 FAM81BQ96LP2 452 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 FNBP1Q96RU3 617 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 ANKFY1Q9P2R3 1169 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 USP20Q9Y2K6 914 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 COQ4Q9Y3A0 265 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 C2CD2Q9Y426 696 aa8.97□□□□□ -0.97
SYNE1-225ENST00000481502 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.97□□□□□ -0.97
SYNE1-225ENST00000481502 TTC26A0AVF1 554 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 TTLL13PA6NNM8 815 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 C9IYK1 514 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 ZC3H11AO75152 810 aaKnown RBP eCLIP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 SERPINC1P01008 464 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 AFPP02771 609 aaKnown RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 ACTN1P12814 892 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 KCNE1P15382 129 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 CYP3A5P20815 502 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 MTIF2P46199 727 aaKnown RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 CASP4P49662 377 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 UBASH3AP57075 661 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 GPNMBQ14956 572 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 NR1I3Q14994 352 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 KRT31Q15323 416 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 DUOXA2Q1HG44 320 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 VWA3BQ502W6 1294 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 FKBP15Q5T1M5 1219 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 EEF1DP3Q658K8 133 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 KRT39Q6A163 491 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 APTXQ7Z2E3 356 aaKnown RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 FMNL3Q8IVF7 1028 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 RNF214Q8ND24 703 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 DBF4BQ8NFT6 615 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 SLC35C1Q96A29 364 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 CPB2Q96IY4 423 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 ZNF668Q96K58 619 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 ZBTB45Q96K62 511 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-225ENST00000481502 ERGIC2Q96RQ1 377 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 PPP1R16BQ96T49 567 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 ADAM2Q99965 735 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 FAM213AQ9BRX8 229 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 NUP58Q9BVL2 599 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 EDEM3Q9BZQ6 932 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 HAPLN2Q9GZV7 340 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 WNT8AQ9H1J5 351 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 NDST4Q9H3R1 872 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 PCIF1Q9H4Z3 704 aa8.96□□□□□ -0.98
SYNE1-225ENST00000481502 TMEM8AQ9HCN3 771 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms