RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NCAM2O15394 837 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 SLC37A4O43826 429 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 XYLBO75191 536 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 LMNB2Q03252 620 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 SSRP1Q08945 709 aaKnown RBP19.11■□□□□ 0.65
VIM-204ENST00000478746 XKR9Q5GH70 373 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 TRIM22Q8IYM9 498 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 FBXL16Q8N461 479 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 NELL2Q99435 816 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 MTRQ99707 1265 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 CLSTN3Q9BQT9 956 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 NXF3Q9H4D5 531 aaKnown RBP19.11■□□□□ 0.65
VIM-204ENST00000478746 VAV3Q9UKW4 847 aa19.11■□□□□ 0.65
VIM-204ENST00000478746 SMG5Q9UPR3 1016 aaKnown RBP19.11■□□□□ 0.65
VIM-204ENST00000478746 SF3B1O75533 1304 aaKnown RBP eCLIP19.1■□□□□ 0.65
VIM-204ENST00000478746 CCL16O15467 120 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 C8AP07357 584 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 PDIA3P30101 505 aaKnown RBP19.1■□□□□ 0.65
VIM-204ENST00000478746 GRIK3Q13003 919 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 TFDP1Q14186 410 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 EPHA7Q15375 998 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 INF2Q27J81 1249 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 RTP2Q5QGT7 225 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 CEP57Q86XR8 500 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 ITFG1Q8TB96 612 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 KXD1Q9BQD3 176 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 LXNQ9BS40 222 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 TTPALQ9BTX7 342 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 PHF20Q9BVI0 1012 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 EPC1Q9H2F5 836 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 KLK14Q9P0G3 267 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 PARP2Q9UGN5 583 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 USP18Q9UMW8 372 aa19.1■□□□□ 0.65
VIM-204ENST00000478746 DCDC2BA2VCK2 349 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 ZBTB39O15060 712 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 TBC1D4O60343 1298 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 LILRB5O75023 590 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 ARF4P18085 180 aaPredicted RBP19.09■□□□□ 0.65
VIM-204ENST00000478746 HOXA9P31269 272 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 POU5F1BQ06416 359 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 HSP90AA2PQ14568 343 aaPredicted RBP19.09■□□□□ 0.65
VIM-204ENST00000478746 BMP2KLQ5H9B9 411 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 IFNLR1Q8IU57 520 aaPredicted RBP19.09■□□□□ 0.65
VIM-204ENST00000478746 NELL1Q92832 810 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 KCNB2Q92953 911 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 CLDN23Q96B33 292 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 RTKNQ9BST9 563 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 AGXT2Q9BYV1 514 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 KCNMB3Q9NPA1 279 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 RGL1Q9NZL6 768 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 CACNG4Q9UBN1 327 aa19.09■□□□□ 0.65
VIM-204ENST00000478746 COL4A3Q01955 1670 aa19.08■□□□□ 0.65
VIM-204ENST00000478746 MARCH6O60337 910 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 NPTXRO95502 500 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 RPS6KB1P23443 525 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 MBTD1Q05BQ5 628 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 PSMD5Q16401 504 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 AMHR2Q16671 573 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 FAM171A1Q5VUB5 890 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 GALNT17Q6IS24 598 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 SLC27A1Q6PCB7 646 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 TSSK4Q6SA08 328 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 TPRG1Q6ZUI0 275 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 KRT25Q7Z3Z0 450 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 DAGLBQ8NCG7 672 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 LNX1Q8TBB1 728 aaPredicted RBP19.08■□□□□ 0.64
VIM-204ENST00000478746 HASPINQ8TF76 798 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 PIK3R5Q8WYR1 880 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 DYDC2Q96IM9 177 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 PAAF1Q9BRP4 392 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 ZSWIM4Q9H7M6 989 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 PATJQ8NI35 1801 aa19.08■□□□□ 0.64
VIM-204ENST00000478746 TARSP26639 723 aaKnown RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 RPS9P46781 194 aaKnown RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 IRX6P78412 446 aaPredicted RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 TUSC3Q13454 348 aa19.07■□□□□ 0.64
VIM-204ENST00000478746 CTTNQ14247 550 aaKnown RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 UVSSAQ2YD98 709 aa19.07■□□□□ 0.64
VIM-204ENST00000478746 AXDND1Q5T1B0 1012 aaPredicted RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 ZNF852Q6ZMS4 543 aa19.07■□□□□ 0.64
VIM-204ENST00000478746 CDR2LQ86X02 465 aaPredicted RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 XPNPEP1Q9NQW7 623 aa19.07■□□□□ 0.64
VIM-204ENST00000478746 KCNH3Q9ULD8 1083 aa19.07■□□□□ 0.64
VIM-204ENST00000478746 MRPS17Q9Y2R5 130 aaKnown RBP19.07■□□□□ 0.64
VIM-204ENST00000478746 SNX14Q9Y5W7 946 aa19.07■□□□□ 0.64
VIM-204ENST00000478746 B4GALT5O43286 388 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 DEXIO95424 95 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 TGM1P22735 817 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 EVCP57679 992 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 NPY5RQ15761 445 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 PABPC1LQ4VXU2 614 aaKnown RBP19.06■□□□□ 0.64
VIM-204ENST00000478746 NCAPH2Q6IBW4 605 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 PPP4R3AQ6IN85 833 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 PDXDC1Q6P996 788 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 TPH2Q8IWU9 490 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 SLC7A14Q8TBB6 771 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 ASAP3Q8TDY4 903 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 FAM126AQ9BYI3 521 aaPredicted RBP19.06■□□□□ 0.64
VIM-204ENST00000478746 HCFC1R1Q9NWW0 138 aa19.06■□□□□ 0.64
VIM-204ENST00000478746 DNMT3BQ9UBC3 853 aaKnown RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms