RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PSMC6P62333 389 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 FKBP1AP62942 108 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 RASA3Q14644 834 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 RASA2Q15283 850 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 PTPROQ16827 1216 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 GJB7Q6PEY0 223 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 TRIM72Q6ZMU5 477 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 RGS9BPQ6ZS82 235 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 CD101Q93033 1021 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 LENG9Q96B70 501 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 SAAL1Q96ER3 474 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 NT5C1BQ96P26 610 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 PITPNM3Q9BZ71 974 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 VCXQ9H320 206 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 ST6GALNAC4Q9H4F1 302 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 SRP68Q9UHB9 627 aaKnown RBP6.54□□□□□ -1.36
HERC4-209ENST00000473533 CD2APQ9Y5K6 639 aa6.54□□□□□ -1.36
HERC4-209ENST00000473533 EMSYQ7Z589 1322 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 FAM47DPA6NHR8 397 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 K7ENM7 598 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 UNC5CO95185 931 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 BMP3P12645 472 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SCP2P22307 547 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 NMT1P30419 496 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 ALDH5A1P51649 535 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 SH3BGRP55822 239 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 CDR2Q01850 454 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 CYP4A11Q02928 519 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 GRIK5Q16478 980 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 EPC2Q52LR7 807 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 RBM26Q5T8P6 1007 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 CAPRIN2Q6IMN6 1127 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 CCDC174Q6PII3 467 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ADAT2Q7Z6V5 191 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 TDRPQ86YL5 185 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SP8Q8IXZ3 490 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 FAM71AQ8IYT1 594 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 C7orf43Q8WVR3 580 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ZC3H12CQ9C0D7 883 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 GPR88Q9GZN0 384 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 LRMDAQ9H2I8 198 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SSU72Q9NP77 194 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 ABCF3Q9NUQ8 709 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 FGFR1OP2Q9NVK5 253 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 AJAP1Q9UKB5 411 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 IGSF9BQ9UPX0 1349 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 RSPH10B2B2RC85 870 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 H0YCG3 227 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SMAPO00193 183 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 MAGEB2O15479 319 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 PSTPIP1O43586 416 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 RAD21O60216 631 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ZWINTO95229 277 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 RSPH10BP0C881 870 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 TROVE2P10155 538 aaKnown RBP eCLIP6.53□□□□□ -1.36
HERC4-209ENST00000473533 EEF2P13639 858 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 MAPK4P31152 587 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ADCY8P40145 1251 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SLCO1A2P46721 670 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 POLGP54098 1239 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 GTF2IP78347 998 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 NFIXQ14938 502 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ACAD10Q6JQN1 1059 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 OTOP1Q7RTM1 612 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 APBB1IPQ7Z5R6 666 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 ARHGAP24Q8N264 748 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 AGAP11Q8TF27 550 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ARHGEF1Q92888 912 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 STAMBPL1Q96FJ0 436 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 DYDC2Q96IM9 177 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 DNAJC18Q9H819 358 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 MRPL47Q9HD33 250 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 SAR1AQ9NR31 198 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 PRKAG3Q9UGI9 489 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 DBR1Q9UK59 544 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 COG5Q9UP83 839 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SPATA31A6Q5VVP1 1343 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 OPLAHO14841 1288 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 BACH1O14867 736 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 PRPF4O43172 522 aaKnown RBP eCLIP6.53□□□□□ -1.361e-6■■■□□ 14.7
HERC4-209ENST00000473533 LRRN2O75325 713 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 PSMD10O75832 226 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 RPSAP08865 295 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 GCKP35557 465 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 YARSP54577 528 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 MCCD1P59942 119 aaPredicted RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 TAF11Q15544 211 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SEPT7Q16181 437 aaKnown RBP6.53□□□□□ -1.36
HERC4-209ENST00000473533 CCNG2Q16589 344 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 GRIPAP1Q4V328 841 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 CBWD6Q4V339 395 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 CBWD3Q5JTY5 395 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 CBWD5Q5RIA9 395 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 KRT39Q6A163 491 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 PHLDB3Q6NSJ2 640 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ASRGL1Q7L266 308 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 NIPA1Q7RTP0 329 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SAMD3Q8N6K7 520 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ANKRD42Q8N9B4 389 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms