RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZDHHC14Q8IZN3 488 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 FBXL6Q8N531 539 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 COLEC11Q9BWP8 271 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 SNTG2Q9NY99 539 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 SORCS3Q9UPU3 1222 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 DOCK8Q8NF50 2099 aa20.74■□□□□ 0.91
CCDC88B-206ENST00000473405 LIG1P18858 919 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 PRPHP41219 470 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 TUSC3Q13454 348 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 MTMR3Q13615 1198 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 HSP90AA2PQ14568 343 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 IER5LQ5T953 404 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 C15orf39Q6ZRI6 1047 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 CMASQ8NFW8 434 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 KIFAP3Q92845 792 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 MMTAG2Q9BU76 263 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 SMOC2Q9H3U7 446 aa20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-206ENST00000473405 SPDYE4A6NLX3 237 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 E9PMD0 336 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 LAD1O00515 517 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 KIF4AO95239 1232 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 GLUD1P00367 558 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 ASGR2P07307 311 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 CDC25AP30304 524 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 EFNA5P52803 228 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 NT5DC1Q5TFE4 455 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 KCNK18Q7Z418 384 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 SUGP1Q8IWZ8 645 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 DAW1Q8N136 415 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 PRSS33Q8NF86 280 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 TMX3Q96JJ7 454 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 IFT74Q96LB3 600 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 RAB34Q9BZG1 259 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 CFAP54Q96N23 3096 aa20.72■□□□□ 0.91
CCDC88B-206ENST00000473405 CASTOR2A6NHX0 329 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 ST18O60284 1047 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 PDGFBP01127 241 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 VCPP55072 806 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 TMEM132AQ24JP5 1023 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 USP41Q3LFD5 358 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 RTP2Q5QGT7 225 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 CCDC149Q6ZUS6 474 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 GPR65Q8IYL9 337 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 UBALD2Q8IYN6 164 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 HASPINQ8TF76 798 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 ADPGKQ9BRR6 497 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 RUSC1Q9BVN2 902 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 LIMD1Q9UGP4 676 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 STK24Q9Y6E0 443 aa20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 SF3B1O75533 1304 aaKnown RBP eCLIP20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 PDCD11Q14690 1871 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-206ENST00000473405 CITO14578 2027 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 ZFHX2Q9C0A1 2572 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 PAPLNO95428 1278 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 MAPK7Q13164 816 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 DCAF4L1Q3SXM0 396 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 ATF7IP2Q5U623 682 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 KRT79Q5XKE5 535 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 DTHD1Q6ZMT9 781 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 RIN2Q8WYP3 895 aaPredicted RBP20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 RHOBTB2Q9BYZ6 727 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 FNIP2Q9P278 1114 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 GDAQ9Y2T3 454 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 KIF3AQ9Y496 699 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 PHLPP2Q6ZVD8 1323 aa20.7■□□□□ 0.9
CCDC88B-206ENST00000473405 FRYLO94915 3013 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 TGM5O43548 720 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 N4BP1O75113 896 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 HIP1RO75146 1068 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 TADA2AO75478 443 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 RFPL2O75678 378 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 C1RP00736 705 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 THP07101 528 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 SPATA31D3P0C874 917 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 MYBP10242 640 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 RPL17P18621 184 aaKnown RBP20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 NPTX2P47972 431 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 ATP2C1P98194 919 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 RILPL1Q5EBL4 403 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 MCTP1Q6DN14 999 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 PRSS55Q6UWB4 352 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 SPATA31D4Q6ZUB0 917 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 PALB2Q86YC2 1186 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 PLCD3Q8N3E9 789 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 ZNF707Q96C28 371 aaPredicted RBP20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 DNM3Q9UQ16 869 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 DOCK6Q96HP0 2047 aa20.69■□□□□ 0.9
CCDC88B-206ENST00000473405 CCDC195A0A1B0GUA6 201 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 GJB2P29033 226 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 PEX3P56589 373 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 RINT1Q6NUQ1 792 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 LILRA6Q6PI73 481 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 C1orf186Q6ZWK4 172 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 OTOP3Q7RTS5 596 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 TAS1R3Q7RTX0 852 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 GLYCTKQ8IVS8 523 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 HDAC7Q8WUI4 952 aa20.68■□□□□ 0.9
CCDC88B-206ENST00000473405 ARHGAP28Q9P2N2 729 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms