RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 ALDH2P05091 517 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 GALTP07902 379 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 SCNN1GP51170 649 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 YARSP54577 528 aaKnown RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 EHHADHQ08426 723 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 DSC1Q08554 894 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 GRIK3Q13003 919 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 CUL4BQ13620 913 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 L1TD1Q5T7N2 865 aaKnown RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 SLFN12LQ6IEE8 588 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 KANK3Q6NY19 840 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 KRBA2Q6ZNG9 492 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 ZNF280BQ86YH2 543 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 SLC39A11Q8N1S5 342 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 MAFAQ8NHW3 353 aaPredicted RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 CCDC34Q96HJ3 373 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 ACAP3Q96P50 834 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 IPO9Q96P70 1041 aaKnown RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 BLZF1Q9H2G9 400 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 ALG13Q9NP73 1137 aaKnown RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 TSHZ2Q9NRE2 1034 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 TOPORSQ9NS56 1045 aaPredicted RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 KLK14Q9P0G3 267 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 ANKFY1Q9P2R3 1169 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 PUF60Q9UHX1 559 aaKnown RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 GDAQ9Y2T3 454 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 STYXL1Q9Y6J8 313 aa16.72■□□□□ 0.27
SDC3-203ENST00000471567 COL4A4P53420 1690 aaPredicted RBP16.72■□□□□ 0.27
SDC3-203ENST00000471567 MYBP10242 640 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 MATR3P43243 847 aaKnown RBP eCLIP16.71■□□□□ 0.27
SDC3-203ENST00000471567 KRT17Q04695 432 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 TPRNQ4KMQ1 711 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 XKR4Q5GH76 650 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 FAM26FQ5R3K3 315 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 COLGALT2Q8IYK4 626 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 GRAMD1CQ8IYS0 662 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 CEP120Q8N960 986 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 POF1BQ8WVV4 589 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 GBP3Q9H0R5 595 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 TMEM206Q9H813 350 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 DNAJB4Q9UDY4 337 aa16.71■□□□□ 0.27
SDC3-203ENST00000471567 A0A0B4J269 797 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 OGTO15294 1046 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 EIF3DO15371 548 aaKnown RBP eCLIP16.7■□□□□ 0.26
SDC3-203ENST00000471567 NR1I2O75469 434 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 THP07101 528 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 CLTAP09496 248 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 HARSP12081 509 aaKnown RBP16.7■□□□□ 0.26
SDC3-203ENST00000471567 CASP1P29466 404 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 PBX3P40426 434 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 SLC11A1P49279 550 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 CASP5P51878 434 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 OSTNP61366 133 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 POSTNQ15063 836 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 TIGD5Q53EQ6 642 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 PDE12Q6L8Q7 609 aaKnown RBP16.7■□□□□ 0.26
SDC3-203ENST00000471567 SLC39A4Q6P5W5 647 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 ALKAL1Q6UXT8 129 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 FMR1NBQ8N0W7 255 aaPredicted RBP16.7■□□□□ 0.26
SDC3-203ENST00000471567 TMEM87AQ8NBN3 555 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 ENGASEQ8NFI3 743 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 TMEM169Q96HH4 297 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 FGFBP2Q9BYJ0 223 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 HAPLN2Q9GZV7 340 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 STK39Q9UEW8 545 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 FAN1Q9Y2M0 1017 aa16.7■□□□□ 0.26
SDC3-203ENST00000471567 PRRC2BQ5JSZ5 2229 aaKnown RBP16.7■□□□□ 0.26
SDC3-203ENST00000471567 TRANK1O15050 2925 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.69■□□□□ 0.26
SDC3-203ENST00000471567 NT5C1B-RDH14C9J2C7 533 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 ANKRD63C9JTQ0 380 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 PTGESO14684 152 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 KLRC4O43908 158 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 B4GALT3O60512 393 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 DNAJB1P25685 340 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 FAM160A1Q05DH4 1040 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 KCNA1Q09470 495 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 PSMD2Q13200 908 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 TUSC3Q13454 348 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 CAMK1Q14012 370 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 EPM2AIP1Q7L775 607 aaPredicted RBP16.69■□□□□ 0.26
SDC3-203ENST00000471567 SYCP3Q8IZU3 236 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 ZNF507Q8TCN5 953 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 IGSF21Q96ID5 467 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 SNX27Q96L92 541 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 MSTO1Q9BUK6 570 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 PLEKHA5Q9HAU0 1116 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 UBE4BO95155 1302 aa16.69■□□□□ 0.26
SDC3-203ENST00000471567 CDH23Q9H251 3354 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 SMIM28A0A1B0GU29 152 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 NRP1O14786 923 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 FAM189A1O60320 539 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 PRPF6O94906 941 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 KCNE1P15382 129 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 POU5F1Q01860 360 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 SNW1Q13573 536 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 SLC10A6Q3KNW5 377 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 DDX53Q86TM3 631 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 MICALL1Q8N3F8 863 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 HPS3Q969F9 1004 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms