RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 GPR20Q99678 358 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 EIF2AK1Q9BQI3 630 aaKnown RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 SSBP4Q9BWG4 385 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CCSER1Q9C0I3 900 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 DISC1Q9NRI5 854 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 KCNH3Q9ULD8 1083 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 PTPN22Q9Y2R2 807 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 IGKV6D-21A0A0A0MT36 114 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 FSD2A1L4K1 749 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 TMEM150BA6NC51 233 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 MYADML2A6NDP7 307 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 GOLGA6L4A6NEF3 574 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 WDR64B1ANS9 1081 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 GOLGA6L22H0YM25 854 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 POLR2DO15514 142 aaKnown RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 DYNC1LI2O43237 492 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF862O60290 1169 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF202O95125 648 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 B3GALT4O96024 378 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 HMGCRP04035 888 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 RPA1P27694 616 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 GRK4P32298 578 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 UBA7P41226 1012 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 PSMC6P62333 389 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 RACK1P63244 317 aaKnown RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 FAM160A1Q05DH4 1040 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 EPHA7Q15375 998 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ZRSR1Q15695 479 aaKnown RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 KLHL40Q2TBA0 621 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ZSCAN23Q3MJ62 389 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 LONRF3Q496Y0 759 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF394Q53GI3 561 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 MFSD14CQ5VZR4 134 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 ZNF746Q6NUN9 644 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 KCNV1Q6PIU1 500 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 MIER3Q7Z3K6 550 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 AFG1LQ8WV93 481 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 NECAB3Q96P71 396 aaPredicted RBP5.28□□□□□ -1.56
SF3B1-208ENST00000470268 SDF4Q9BRK5 362 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 CCSER2Q9H7U1 834 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 MLXIPQ9HAP2 919 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 BLOC1S4Q9NUP1 217 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 DACT1Q9NYF0 836 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 RNF112Q9ULX5 631 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 MCM3APO60318 1980 aa5.28□□□□□ -1.56
SF3B1-208ENST00000470268 E9PMD0 336 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 ENC1O14682 589 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SEPT4O43236 478 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 FBXO24O75426 580 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 STBD1O95210 358 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 GH1P01241 217 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SUPT20HL2P0C7V6 817 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 AKR1A1P14550 325 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 PLCG1P19174 1290 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 CNGA1P29973 690 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 TCF7P36402 384 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 CCT6AP40227 531 aaKnown RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SYKP43405 635 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 CTCFP49711 727 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 PRMT2P55345 433 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 PCDH1Q08174 1060 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 FAAP100Q0VG06 881 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 ARHGEF6Q15052 776 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 TMEM119Q4V9L6 283 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 HYIQ5T013 277 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 KRT79Q5XKE5 535 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SWSAP1Q6NVH7 229 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 ADAMTSL4Q6UY14 1074 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 TRMT1LQ7Z2T5 733 aaKnown RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 TLK2Q86UE8 772 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SMAP1Q8IYB5 467 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 GRAMD1CQ8IYS0 662 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 PIGOQ8TEQ8 1089 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SEPT1Q8WYJ6 367 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 STAMQ92783 540 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 ERCC4Q92889 916 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 DHX58Q96C10 678 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SPATA33Q96N06 139 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SH2D3AQ9BRG2 576 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 LXNQ9BS40 222 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 POLR3CQ9BUI4 534 aaPredicted RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 RAB34Q9BZG1 259 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 GOLGA2P5Q9HBQ8 144 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 DDX19AQ9NUU7 478 aaKnown RBP5.27□□□□□ -1.57
SF3B1-208ENST00000470268 TMEM39AQ9NV64 488 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 GABBR1Q9UBS5 961 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 NRBP1Q9UHY1 535 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 FAM184BQ9ULE4 1060 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SAMM50Q9Y512 469 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 PCDHA10Q9Y5I2 948 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 IGSF9BQ9UPX0 1349 aa5.27□□□□□ -1.57
SF3B1-208ENST00000470268 SYCE3A1L190 88 aa5.26□□□□□ -1.57
SF3B1-208ENST00000470268 GOLGA6L3A6NEY3 463 aa5.26□□□□□ -1.57
SF3B1-208ENST00000470268 EIF4EBP3O60516 100 aaPredicted RBP5.26□□□□□ -1.57
SF3B1-208ENST00000470268 ADAMTS4O75173 837 aa5.26□□□□□ -1.57
SF3B1-208ENST00000470268 DUSP11O75319 330 aaKnown RBP5.26□□□□□ -1.57
SF3B1-208ENST00000470268 PGK1P00558 417 aa5.26□□□□□ -1.57
SF3B1-208ENST00000470268 CASP1P29466 404 aa5.26□□□□□ -1.57
SF3B1-208ENST00000470268 SFNP31947 248 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms