RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 PBX4Q9BYU1 374 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 KCTD10Q9H3F6 313 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 NXF3Q9H4D5 531 aaKnown RBP13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 ASB7Q9H672 318 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 SLC28A3Q9HAS3 691 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 AGPAT3Q9NRZ7 376 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 SLC38A7Q9NVC3 462 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 PARP2Q9UGN5 583 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 DACH1Q9UI36 760 aa13.77□□□□□ -0.21
SPTLC1-204ENST00000469778 BICDL2A1A5D9 508 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 TBKBP1A7MCY6 615 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 RB1P06400 928 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 PRCPP42785 496 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 ENPEPQ07075 957 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 CLLU1OSQ5K130 101 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 CENPPQ6IPU0 288 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 SLC39A4Q6P5W5 647 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 ALKAL1Q6UXT8 129 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 USP37Q86T82 979 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 CDR2LQ86X02 465 aaPredicted RBP13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 THNSL1Q8IYQ7 743 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 ADSSL1Q8N142 457 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 XXYLT1Q8NBI6 393 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 GLIS3Q8NEA6 775 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 CASD1Q96PB1 797 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 RPS6KC1Q96S38 1066 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 TSG101Q99816 390 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 PLVAPQ9BX97 442 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 RPF1Q9H9Y2 349 aaKnown RBP13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 SNTG2Q9NY99 539 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 PCDH10Q9P2E7 1040 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 CPSF3Q9UKF6 684 aaKnown RBP13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 USP20Q9Y2K6 914 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 DERAQ9Y315 318 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 HES2Q9Y543 173 aa13.76□□□□□ -0.21
SPTLC1-204ENST00000469778 ZNF233A6NK53 670 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 MAPK13O15264 365 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 XPOTO43592 962 aaKnown RBP13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 FAM189A1O60320 539 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 RECQL4O94761 1208 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 IL18RAPO95256 599 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 THP07101 528 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 FGFR1P11362 822 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 LAG3P18627 525 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 PAX3P23760 479 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 DNAJB2P25686 324 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 RNASELQ05823 741 aaKnown RBP13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 GRIK3Q13003 919 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 HABP4Q5JVS0 413 aaKnown RBP13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 FAM117BQ6P1L5 589 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 NELFCDQ8IXH7 590 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 GPD1LQ8N335 351 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 HELQQ8TDG4 1101 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 TIFAQ96CG3 184 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 FAM193BQ96PV7 902 aaPredicted RBP13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 GAD1Q99259 594 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 TMEM175Q9BSA9 504 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 RNF19AQ9NV58 838 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 DMAC2Q9NW81 257 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 HSPBP1Q9NZL4 362 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 GDAQ9Y2T3 454 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 PCDHB12Q9Y5F1 795 aa13.75□□□□□ -0.21
SPTLC1-204ENST00000469778 TTC26A0AVF1 554 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 GRXCR1A8MXD5 290 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 FGFR1OPO95684 399 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 ALDH2P05091 517 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 AKAP5P24588 427 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 PPM1AP35813 382 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 ALDH7A1P49419 539 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 RABGGTBP53611 331 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 ERVK-21P61565 698 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 FKBP3Q00688 224 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 PPP2R3AQ06190 1150 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 SLC10A6Q3KNW5 377 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 SASS6Q6UVJ0 657 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 GSTCDQ8NEC7 633 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 LPPQ93052 612 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 P2RX5Q93086 422 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 DDX27Q96GQ7 796 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 UROC1Q96N76 676 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 TGS1Q96RS0 853 aaKnown RBP13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 FAM213AQ9BRX8 229 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 APOL6Q9BWW8 343 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 HAPLN2Q9GZV7 340 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 TBC1D13Q9NVG8 400 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 CNTN3Q9P232 1028 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 FRMD4BQ9Y2L6 1034 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 C2CD2Q9Y426 696 aa13.74□□□□□ -0.21
SPTLC1-204ENST00000469778 RANBP2P49792 3224 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 SMIM28A0A1B0GU29 152 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 LINC01553A4QN01 128 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 PPP1R3GB7ZBB8 358 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 C5orf67F2Z3F1 127 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 CETN3O15182 167 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 EXOC3O60645 756 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 NR3C1P04150 777 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 CA3P07451 260 aa13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 HARSP12081 509 aaKnown RBP13.73□□□□□ -0.21
SPTLC1-204ENST00000469778 PRKCSHP14314 528 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms