RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PARP14Q460N5 1801 aa5.99□□□□□ -1.45
HMGB1-207ENST00000468384 DCHS2Q6V1P9 2916 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 LAMA4Q16363 1823 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 MXRA5Q9NR99 2828 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 A0A087X0B3 334 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 PI4KAP2A4QPH2 592 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 TBKBP1A7MCY6 615 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 KIAA1324LA8MWY0 1029 aaPredicted RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 ESPNB1AK53 854 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 ATP2A1O14983 1001 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 EXTL3O43909 919 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 NADKO95544 446 aaPredicted RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 HLA-DOAP06340 250 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 CASTP20810 708 aaKnown RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 WEE1P30291 646 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 PPM1AP35813 382 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 EPHA5P54756 1037 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 MECOMQ03112 1051 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 LRRC32Q14392 662 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 BMS1Q14692 1282 aaKnown RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 NOLC1Q14978 699 aaKnown RBP eCLIP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 AGERQ15109 404 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 KIAA0753Q2KHM9 967 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 METTL24Q5JXM2 366 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 BPHLQ86WA6 291 aaPredicted RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 ERICH1Q86X53 443 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 ARID3BQ8IVW6 561 aaPredicted RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 NAXDQ8IW45 347 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 PI4KAP1Q8N8J0 262 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 AUTS2Q8WXX7 1259 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 SMG7Q92540 1137 aaKnown RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 ASB16Q96NS5 453 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 PHF20Q9BVI0 1012 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 CWH43Q9H720 699 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 VCPKMTQ9H867 229 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 A1CFQ9NQ94 594 aaKnown RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 ABCF2Q9UG63 623 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 SAP30BPQ9UHR5 308 aaKnown RBP5.98□□□□□ -1.45
HMGB1-207ENST00000468384 DCTN4Q9UJW0 460 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 KNSTRNQ9Y448 316 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 PCDHB11Q9Y5F2 797 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 GON4LQ3T8J9 2241 aa5.98□□□□□ -1.45
HMGB1-207ENST00000468384 HAS3O00219 553 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 CBFA2T3O75081 653 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 FGFR2P21802 821 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 VAMP1P23763 118 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 GBP1P32455 592 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 PBX3P40426 434 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 ATP8B2P98198 1209 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 KLRC3Q07444 240 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 USP4Q13107 963 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 LPIN1Q14693 890 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 KARSQ15046 597 aaKnown RBP5.97□□□□□ -1.45
HMGB1-207ENST00000468384 SMAD1Q15797 465 aaKnown RBP5.97□□□□□ -1.45
HMGB1-207ENST00000468384 SMTNL2Q2TAL5 461 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 FAM26DQ5JW98 314 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 PMS2CLQ68D20 193 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 KCNT2Q6UVM3 1135 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 XKR5Q6UX68 686 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 KSR2Q6VAB6 950 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 SLCO4C1Q6ZQN7 724 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 VASH1Q7L8A9 365 aaPredicted RBP5.97□□□□□ -1.45
HMGB1-207ENST00000468384 ABCA7Q8IZY2 2146 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 TGFBRAP1Q8WUH2 860 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 DNASE1L2Q92874 299 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 ATP6V0A1Q93050 837 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 PHKBQ93100 1093 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 NAF1Q96HR8 494 aaKnown RBP5.97□□□□□ -1.45
HMGB1-207ENST00000468384 DNAJC2Q99543 621 aaKnown RBP5.97□□□□□ -1.45
HMGB1-207ENST00000468384 KATNAL1Q9BW62 490 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 C1QTNF2Q9BXJ5 285 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 EHMT1Q9H9B1 1298 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 FSCN3Q9NQT6 498 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 SPG21Q9NZD8 308 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 CDH7Q9ULB5 785 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 LRFN2Q9ULH4 789 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 ZNF281Q9Y2X9 895 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 IRAK3Q9Y616 596 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 FLT1P17948 1338 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 CACNA1FO60840 1977 aa5.97□□□□□ -1.45
HMGB1-207ENST00000468384 SDK2Q58EX2 2172 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 M0R2N6 131 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 INPPL1O15357 1258 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 CLDN1O95832 211 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 CHRNA1P02708 482 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 ATXN1LP0C7T5 689 aaKnown RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 EPXP11678 715 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 SCG2P13521 617 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 SSTR4P31391 388 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 ACTN2P35609 894 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 CLCN4P51793 760 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 SLC14A1Q13336 389 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 RTP5Q14D33 572 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 PUM3Q15397 648 aaKnown RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 LINC00303Q3SY05 128 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 SPTY2D1Q68D10 685 aaPredicted RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 SLC23A3Q6PIS1 610 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 AGMOQ6ZNB7 445 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 LRRC47Q8N1G4 583 aaKnown RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 MINDY1Q8N5J2 469 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms