RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 MSCO60682 206 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 LGALS2P05162 132 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 DNA2P51530 1060 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 CLDN10P78369 228 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 C2orf54Q08AI8 447 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 PSMD6Q15008 389 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 C15orf39Q6ZRI6 1047 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 PLEKHH3Q7Z736 793 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 KRT222Q8N1A0 295 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 PPM1KQ8N3J5 372 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 RNF149Q8NC42 400 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 VTI1AQ96AJ9 217 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 MSTO1Q9BUK6 570 aa19.73■□□□□ 0.75
COL9A3-205ENST00000466192 SUCLA2Q9P2R7 463 aaPredicted RBP19.73■□□□□ 0.75
COL9A3-205ENST00000466192 KAT6AQ92794 2004 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 GRID2IPA4D2P6 1211 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 GJB1P08034 283 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 NOP2P46087 812 aaKnown RBP19.72■□□□□ 0.75
COL9A3-205ENST00000466192 EFNA5P52803 228 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 LMBRD2Q68DH5 695 aaPredicted RBP19.72■□□□□ 0.75
COL9A3-205ENST00000466192 AFG1LQ8WV93 481 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 ELMO3Q96BJ8 720 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 PDE11AQ9HCR9 933 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 SMARCAL1Q9NZC9 954 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 PACSIN2Q9UNF0 486 aaPredicted RBP19.72■□□□□ 0.75
COL9A3-205ENST00000466192 ZNF236Q9UL36 1845 aa19.72■□□□□ 0.75
COL9A3-205ENST00000466192 SASH3O75995 380 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 TBC1D8O95759 1140 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 MATR3P43243 847 aaKnown RBP eCLIP19.71■□□□□ 0.75
COL9A3-205ENST00000466192 LONRF2Q1L5Z9 754 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 ZPBP2Q6X784 338 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 RHPN2Q8IUC4 686 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 PPTC7Q8NI37 304 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 HELQQ8TDG4 1101 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 EMID1Q96A84 441 aaPredicted RBP19.71■□□□□ 0.75
COL9A3-205ENST00000466192 EHD2Q9NZN4 543 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 CPA4Q9UI42 421 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 ATP8B3O60423 1300 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 PTPRJQ12913 1337 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 TMCO5BA8MYB1 307 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 H2AFZP0C0S5 128 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 MAPK4P31152 587 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 PRPF4BQ13523 1007 aaKnown RBP19.71■□□□□ 0.75
COL9A3-205ENST00000466192 CCDC181Q5TID7 509 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 EFCAB12Q6NXP0 572 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 H2AFVQ71UI9 128 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 NPLOC4Q8TAT6 608 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 SLC20A1Q8WUM9 679 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 JPH2Q9BR39 696 aaPredicted RBP19.71■□□□□ 0.75
COL9A3-205ENST00000466192 RBAKQ9NYW8 714 aaPredicted RBP19.71■□□□□ 0.75
COL9A3-205ENST00000466192 ZSWIM8A7E2V4 1837 aa19.71■□□□□ 0.75
COL9A3-205ENST00000466192 FAM170AA1A519 330 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 IGF2BP3O00425 579 aaKnown RBP eCLIP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 LDHAP00338 332 aaKnown RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 CLCN3P51790 818 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 SEZ6Q53EL9 994 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 PALB2Q86YC2 1186 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 FAM71AQ8IYT1 594 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 ZNF668Q96K58 619 aaPredicted RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 NT5C1BQ96P26 610 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 FNBP1Q96RU3 617 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 AGPAT1Q99943 283 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 TINF2Q9BSI4 451 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 MRPL4Q9BYD3 311 aaKnown RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 TSKSQ9UJT2 592 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 MGAMO43451 1857 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 ECM2O94769 699 aaPredicted RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 C22orf31O95567 290 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 ZNF286BP0CG31 522 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 HARSP12081 509 aaKnown RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 INSRRP14616 1297 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 TNNI1P19237 187 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 TNFAIP3P21580 790 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 MFAP3P55082 362 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 IGBP1P78318 339 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 MEI1Q5TIA1 1274 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 RASAL3Q86YV0 1011 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 ZBTB8OSQ8IWT0 167 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 METTL13Q8N6R0 699 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 HNRNPLLQ8WVV9 542 aaKnown RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 SHC3Q92529 594 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 TATDN2Q93075 761 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 MS4A14Q96JA4 679 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 PI4K2AQ9BTU6 479 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 GOLPH3Q9H4A6 298 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 ABCB6Q9NP58 842 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 SEPT11Q9NVA2 429 aaKnown RBP19.7■□□□□ 0.74
COL9A3-205ENST00000466192 INTUQ9ULD6 942 aa19.7■□□□□ 0.74
COL9A3-205ENST00000466192 CLDN3O15551 220 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 C4BPAP04003 597 aaKnown RBP19.69■□□□□ 0.74
COL9A3-205ENST00000466192 PRKCBP05771 671 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 SMPD1P17405 629 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 USP8P40818 1118 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 GALCP54803 685 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 ZACNQ401N2 412 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 BEND6Q5SZJ8 279 aaPredicted RBP19.69■□□□□ 0.74
COL9A3-205ENST00000466192 SPATA4Q8NEY3 305 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 ACO2Q99798 780 aaKnown RBP19.69■□□□□ 0.74
COL9A3-205ENST00000466192 FUT8Q9BYC5 575 aa19.69■□□□□ 0.74
COL9A3-205ENST00000466192 FAM189A1O60320 539 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms